Browse Element(s) Details


Os.26698.2.S1_at

Description gb:AK070009.1
DB_XREF= gi:32980033
TID=Os.26698.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0475H04.9 (P0475H04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E15, full insert sequence.
FL= gb:AK070009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4330011/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43250OsAffx.17492.1.S1_at11/118+27212451..27214207MATE efflux family protein, expressed
LOC_Os08g43260OsAffx.17493.1.S1_at11/118+27219829..27220859hypothetical protein
LOC_Os08g43270NANA8+27224572..27225566BAG domain-containing protein, putative, expressed
LOC_Os08g43280OsAffx.6123.1.S1_at9/118+27227254..27230479hypothetical protein
LOC_Os08g43290Os.5780.1.S1_at11/118+27231322..27231994Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300Os.26698.2.S1_at11/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43300Os.52843.1.S1_at1/118+27232268..27237980UBX domain containing protein, expressed
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26698.2.S1_at--717--8551Chr08:27233616..27233640 (25 bp)
TGGAGTCCAAGCTTGCAGCCAAACA
LOC_Os08g43300
Os.26698.2.S1_at--470--4971Chr08:27233590..27233614 (25 bp)
GCATCATTGCCAAAGGAGCCATTAC
LOC_Os08g43300
Os.26698.2.S1_at--627--7551Chr08:27233553..27233577 (25 bp)
GGGCCGTCACTGTTGTAGTTCGCAT
LOC_Os08g43300
Os.26698.2.S1_at--971--6631Chr08:27233542..27233566 (25 bp)
GTTGTAGTTCGCATGCCTGATGGTC
LOC_Os08g43300
Os.26698.2.S1_at--136--5271Chr08:27233508..27233532 (25 bp)
GAAGGCGCTTTATGAAATCCGACAA
LOC_Os08g43300
Os.26698.2.S1_at--639--5591Chr08:27233411..27233512 (25 bp)
GACAACCTTCAGGTCCTTTTTGATT
LOC_Os08g43300
Os.26698.2.S1_at--749--8111Chr08:27233371..27233395 (25 bp)
GGACTTTCAAACCAGGAACCTATAG
LOC_Os08g43300
Os.26698.2.S1_at--1158--7111Chr08:27232603..27232627 (25 bp)
GTCTTTAAGTGATCTTGGCCTCAAT
LOC_Os08g43300
Os.26698.2.S1_at--197--8191Chr08:27232570..27232594 (25 bp)
GGAAGCCTTGTTTCTAGAGCAGATT
LOC_Os08g43300
Os.26698.2.S1_at--122--7871Chr08:27232359..27232383 (25 bp)
GGTTTCATGTGATACTCACCCTGCA
LOC_Os08g43300
Os.26698.2.S1_at--806--6471Chr08:27232349..27232373 (25 bp)
GATACTCACCCTGCATATTTGAACA
LOC_Os08g43300
Target Sequence 
TGGAGTCCAAGCTTGCAGCCAAACAAGCATCATTGCCAAAGGAGCCATTACNAGATGATGTAGGGGCCGTCACTGTTGTA
GTTCGCATGCCTGATGGTCGTCGTCNGGGAAGGCGCTTTATGAAATCCGACAACCTTCAGGTCCTTTTTGATTTCATAGA
TATCNCCAGGACTTTCAAACCAGGAACCTATAGGCTGGTGAGGTCTTATCCCAGGNGTGCATTCACCGACTNTGAGTCTC
AGATGTCTTTAAGTGATCTTGGCCTCAATAGCAAGCAGGAAGCCTTGTTTCTAGAGCAGATTTCAGGATAGGGGGAAACC
GGGAANGAGTTAATTGCAATTAACACAACAGGGATTCACAGAATTTTTTTTTCTTTTTACTTATGCCTGGCACATGTTCG
TGAAAATATTAGCAAGGTTCGCATGAAACTTGGCGTTAAGGTCTCATGACCCTCTTTTGTGTTTTGGAATGGTGACTCTC
AAGTACCGGGTTTCATGTGATACTCACCCTGCATATTTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26698.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis