Browse Element(s) Details

Os.27716.2.S1_a_at

Description

gb:AK101700.1
DB_XREF= gi:32986909
TID=Os.27716.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060E19, full insert sequence.
FL= gb:AK101700.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os08g43334	11/11	HSF-type DNA-binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os08g43270	NA	NA	8	+	27224572..27225566	BAG domain-containing protein, putative, expressed
LOC_Os08g43280	OsAffx.6123.1.S1_at	9/11	8	+	27227254..27230479	hypothetical protein
LOC_Os08g43290	Os.5780.1.S1_at	11/11	8	+	27231322..27231994	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g43300	Os.26698.2.S1_at	11/11	8	+	27232268..27237980	UBX domain containing protein, expressed
LOC_Os08g43300	Os.52843.1.S1_at	1/11	8	+	27232268..27237980	UBX domain containing protein, expressed
LOC_Os08g43310	NA	NA	8	+	27239947..27240453	expressed protein
LOC_Os08g43320	Os.48334.1.S1_at	11/11	8	+	27243191..27246096	membrane protein, putative, expressed
LOC_Os08g43334	Os.27716.2.S1_a_at	11/11	8	+	27247922..27257496	HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334	Os.27716.1.S1_at	10/11	8	+	27247922..27257496	HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334	Os.27482.1.A1_at	1/11	8	+	27247922..27257496	HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350	OsAffx.29646.1.S1_x_at	11/11	8	+	27260376..27263270	NC domain-containing protein, putative, expressed
LOC_Os08g43350	Os.7601.1.S1_s_at	11/11	8	+	27260376..27263270	NC domain-containing protein, putative, expressed
LOC_Os08g43360	Os.57567.1.A1_s_at	11/11	8	+	27265105..27268352	RNA recognition motif family protein, expressed
LOC_Os08g43360	Os.57567.1.A1_at	2/11	8	+	27265105..27268352	RNA recognition motif family protein, expressed
LOC_Os08g43370	Os.6176.1.S1_at	11/11	8	+	27270832..27273595	Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380	Os.10530.1.S1_at	11/11	8	+	27276133..27281040	RabGAP/TBC domain-containing protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009408	biological_process	response to heat
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27716.2.S1_a_at--334--453	1	Chr08:27250534..27250558 (25 bp)	GCCGCGCCCGTATCAGACAACGAGG	LOC_Os08g43334
Os.27716.2.S1_a_at--852--455	1	Chr08:27250531..27250555 (25 bp)	GCGCCCGTATCAGACAACGAGGAGG	LOC_Os08g43334
Os.27716.2.S1_a_at--667--107	1	Chr08:27250509..27250533 (25 bp)	AGGGAATGATGAGCGCGAAGCTCTT	LOC_Os08g43334
Os.27716.2.S1_a_at--167--381	2	Chr11:28307131..28307150 (20 bp)	CTCCATCGGCCGGAAGCGAATGCGG	NONE
Os.27716.2.S1_a_at--281--355	1	Chr08:27250475..27250499 (25 bp)	CATCGGCCGGAAGCGAATGCGGCAC	LOC_Os08g43334
Os.27716.2.S1_a_at--980--411	1	Chr08:27250389..27250413 (25 bp)	CGCACGGCAAGGACGAACAATCGGC	LOC_Os08g43334
Os.27716.2.S1_a_at--592--245	1	Chr08:27250374..27250398 (25 bp)	AACAATCGGCGGAGACGCAGGCCTG	LOC_Os08g43334
Os.27716.2.S1_a_at--1096--353	1	Chr08:27250316..27250340 (25 bp)	CATCCGGGCCTGCAACGGATACGAG	LOC_Os08g43334
Os.27716.2.S1_a_at--114--795	1	Chr08:27250300..27250324 (25 bp)	GGATACGAGTACGACCGAGCCGGCA	LOC_Os08g43334
Os.27716.2.S1_a_at--786--31	1	Chr08:27250298..27250322 (25 bp)	ATACGAGTACGACCGAGCCGGCAGT	LOC_Os08g43334
Os.27716.2.S1_a_at--1151--581	1	Chr08:27250288..27250312 (25 bp)	GACCGAGCCGGCAGTGACCAAGACG	LOC_Os08g43334

Target Sequence

GCCGCGCCCGTATCAGACAACGAGGAGGGAATGATGAGCGCGAAGCTCTTCGGCGTCTCCATCGGCCGGAAGCGAATGCG
GCACGACGGCGGCGGCGACGACGACCACGCGGCGACGGTGAAGGCGGAGCCGATGGACGGGCGGCCGCACGGCAAGGACG
AACAATCGGCGGAGACGCAGGCCTGGCCCATTTACCGGCCCAGGCCCGTTTACCAGCCCATCCGGGCCTGCAACGGATAC
GAGTACGACCGAGCCGGCAGTGACCAAGACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis