Browse Element(s) Details


Os.57567.1.A1_at

Description gb:CR279882
DB_XREF= gi:44666448
DB_XREF=CR279882
CLONE=p217g07p3
TID=Os.57567.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.57567 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g433602/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43310NANA8+27239947..27240453expressed protein
LOC_Os08g43320Os.48334.1.S1_at11/118+27243191..27246096membrane protein, putative, expressed
LOC_Os08g43334Os.27716.2.S1_a_at11/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27716.1.S1_at10/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43334Os.27482.1.A1_at1/118+27247922..27257496HSF-type DNA-binding domain containing protein, expressed
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57567.1.A1_at--1051--8751NONE
TGTATCCCGGAATTCGCCCTTTTGC
NONE
Os.57567.1.A1_at--1128--10111NONE
TATCCCGGAATTCGCCCTTTTGCGC
NONE
Os.57567.1.A1_at--733--10391NONE
TTTTGCGCGGCCTTGTGTTAGGCGT
NONE
Os.57567.1.A1_at--731--9151NONE
TGCGCGGCCTTGTGTTAGGCGTTAA
NONE
Os.57567.1.A1_at--751--4131NONE
CGCGGCCTTGTGTTAGGCGTTAATT
NONE
Os.57567.1.A1_at--698--3611NONE
CTTGTGTTAGGCGTTAATTCGTGCG
NONE
Os.57567.1.A1_at--1035--7391NONE
GTGTTAGGCGTTAATTCGTGCGATT
NONE
Os.57567.1.A1_at--1082--6771NONE
GTTAGGCGTTAATTCGTGCGATTCT
NONE
Os.57567.1.A1_at--74--10451NONE
TTAGGCGTTAATTCGTGCGATTCTG
NONE
Os.57567.1.A1_at--367--4311Chr08:27268308..27268332 (25 bp)
CCTTAATATATGTAGTTGCGCTGGA
LOC_Os08g43360
Os.57567.1.A1_at--487--3111Chr08:27268312..27268336 (25 bp)
AATATATGTAGTTGCGCTGGACGTG
LOC_Os08g43360
Target Sequence 
TGTATCCCGGAATTCGCCCTTTTGCGCGGCCTTGTGTTAGGCGTTAATTCGTGCGATTCTGGTTTTGAGGTGCTTGCGGT
ACCTACGTTTATACGAGCGTTCATACTCTGCGGCGTTACGCTTCTATATTGCGCTGATATCTCCGCCGGTGGCTTCTTCG
TAGGGTTCGGCATCTCATGGTTTGAAATCGTGAAAGGGATGATGCAATAATCGATATTCAGTCTCCATTAGATTGCGTAC
CGTATGATAGAAAATTGGAACTCTGAGAGTACTTCCTCANACTGTANCTGCTTCCTTAANATTTATGGTCAACTGTATTT
GTANCTCGCGGCGTCACCCAGACAGTATGGCTTGTTANCAGGTTANTGTTANCNCTAGTTAACATTTGCTTCCCTTTTTT
TTGGGCATATTTAGTAATTTTAAGAGCTTACTGTTTCTCGCAAATACATGACAACATCTTAGGTTTAATCTAATATAATG
TAANCCTTTTGCCTTTCTGTGGTGTTATTATTTNCCTTAATATATGTAGTTGCGCTGGACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57567.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis