Browse Element(s) Details


Os.17180.1.S1_at

Description gb:AK072163.1
DB_XREF= gi:32982186
TID=Os.17180.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131L23, full insert sequence.
FL= gb:AK072163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4339011/11Cytochrome P450 78A3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43350OsAffx.29646.1.S1_x_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43350Os.7601.1.S1_s_at11/118+27260376..27263270NC domain-containing protein, putative, expressed
LOC_Os08g43360Os.57567.1.A1_s_at11/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43360Os.57567.1.A1_at2/118+27265105..27268352RNA recognition motif family protein, expressed
LOC_Os08g43370Os.6176.1.S1_at11/118+27270832..27273595Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase family protein, expressed
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed
LOC_Os08g43400Os.20403.2.S1_x_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.20403.1.S1_s_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.52106.1.S1_at1/118+27302283..27309595Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010154biological_processfruit development
GO:0004497molecular_functionmonooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17180.1.S1_at--129--7931Chr08:27288256..27288280 (25 bp)
GGATTCTGGGTTGCCACGTTGCTAC
LOC_Os08g43390
Os.17180.1.S1_at--1044--9811Chr08:27288234..27288258 (25 bp)
TACACGAGTTCGATTGGCTTCCCTT
LOC_Os08g43390
Os.17180.1.S1_at--1066--8271Chr08:27288219..27288243 (25 bp)
GGCTTCCCTTGTCAGATAAGTCGCG
LOC_Os08g43390
Os.17180.1.S1_at--600--9391Chr08:27288189..27288213 (25 bp)
TCGATCTGTCGGAGGTGCTGAAGCT
LOC_Os08g43390
Os.17180.1.S1_at--972--2051Chr08:27288051..27288075 (25 bp)
ACTTCCTTCTAGTGCTTGTTGAGAT
LOC_Os08g43390
Os.17180.1.S1_at--1014--10451Chr08:27288000..27288024 (25 bp)
TTACGCTTTGAGTAGAAATGCCCCT
LOC_Os08g43390
Os.17180.1.S1_at--733--2271Chr08:27287985..27288009 (25 bp)
AAATGCCCCTACGTTGTAGTGCGTA
LOC_Os08g43390
Os.17180.1.S1_at--557--7471Chr08:27287923..27287947 (25 bp)
GTGTGTTTTGCACGTCCTAAGTAGT
LOC_Os08g43390
Os.17180.1.S1_at--346--6771Chr08:27287849..27287873 (25 bp)
GTTAACTACCTACCTGCAGGTGATG
LOC_Os08g43390
Os.17180.1.S1_at--57--3111Chr08:27287776..27287800 (25 bp)
AATAGCTCGGTATGCCCATCTCTAT
LOC_Os08g43390
Os.17180.1.S1_at--976--451Chr08:27287759..27287783 (25 bp)
ATCTCTATCCTAAGTGCACGCGTGC
LOC_Os08g43390
Target Sequence 
GGATTCTGGGTTGCCACGTTGCTACACGAGTTCGATTGGCTTCCCTTGTCAGATAAGTCGCGCGGCGTCGATCTGTCGGA
GGTGCTGAAGCTGTCGTGCGAGATGGCAACCCCGCTGGAGGCNAGGCTAAGGCCGCGACGCAAGGTGTGATGACGTGTCA
CCACCGNCACGTGGGACTAAGACGAGGAGAGGGAAGCCGACTTCCACTTCCTTCTAGTGCTTGTTGAGATGTGTAAATGT
CCCTAAATGTAAAGTGTTACGCTTTGAGTAGAAATGCCCCTACGTTGTAGTGCGTAGTATTGTACACTTGTAGTATGTAA
TGCTTGTATTTTTGTGTGTTTTGCACGTCCTAAGTAGTGGAGTAGTAGCTGATAATAGTTAGTTAATTACTCTGCTATTT
AGTCATAGTTAACTACCTACCTGCAGGTGATGAGAGTGACAGTTTTTTTTTNGTTTAATTAACTGCAGGTGATGAGTGTA
NAATAGCTCGGTATGCCCATCTCTATCCTAAGTGCACGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis