Browse Element(s) Details


Os.20403.2.S1_x_at

Description gb:AK102208.1
DB_XREF= gi:32987417
TID=Os.20403.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087H08, full insert sequence.
FL= gb:AK102208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4340011/11Kinesin motor domain containing protein, expressed
LOC_Os04g455801/11kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43380Os.10530.1.S1_at11/118+27276133..27281040RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g43390Os.17180.1.S1_at11/118+27287682..27289992Cytochrome P450 78A3, putative, expressed
LOC_Os08g43400Os.20403.2.S1_x_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.20403.1.S1_s_at11/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43400Os.52106.1.S1_at1/118+27302283..27309595Kinesin motor domain containing protein, expressed
LOC_Os08g43410NANA8+27325466..27327091expressed protein
LOC_Os08g43420OsAffx.6124.1.S1_at11/118+27327799..27328128hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20403.2.S1_x_at--479--3051Chr08:27302793..27302817 (25 bp)
AATCGATCTGAGCTCGAAACAGCGA
LOC_Os08g43400
Os.20403.2.S1_x_at--494--5351Chr08:27302770..27302794 (25 bp)
GAAGATTGCAGCTATCTCGTCTCGT
LOC_Os08g43400
Os.20403.2.S1_x_at--266--8111Chr08:27302743..27302767 (25 bp)
GGACGCAGACCGATATGGAACACAT
LOC_Os08g43400
Os.20403.2.S1_x_at--1159--6012Chr08:27302714..27302738 (25 bp)
GAGAGTGCATCCCTTGTTGCGAAGC
LOC_Os08g43400
Os.20403.2.S1_x_at--440--9131Chr08:27302680..27302704 (25 bp)
TGCTGGAGCCAGCACAGGCACTGAA
LOC_Os08g43400
Os.20403.2.S1_x_at--370--10871Chr08:27302647..27302671 (25 bp)
TTGGACTGAACTTCACACTAGCTCC
LOC_Os08g43400
Os.20403.2.S1_x_at--1162--371Chr08:27302619..27302643 (25 bp)
ATCTGAACGGCGATCCTTCGGCCTT
LOC_Os08g43400
Os.20403.2.S1_x_at--822--10571Chr08:27302603..27302627 (25 bp)
TTCGGCCTTCTAGGTACCTGAAAGA
LOC_Os08g43400
Os.20403.2.S1_x_at--234--9031Chr08:27302576..27302600 (25 bp)
TGCACATTGTGACCGGCAAAACGAT
LOC_Os08g43400
Os.20403.2.S1_x_at--664--2591Chr08:27302557..27302581 (25 bp)
AACGATGGCCCATACGATGACAATG
LOC_Os08g43400
Os.20403.2.S1_x_at--1096--1311Chr08:27302483..27302507 (25 bp)
AGAGGAATTGCTCCCCAGCACTGAT
LOC_Os08g43400
Target Sequence 
AATCGATCTGAGCTCGAAACAGCGAAGATTGCAGCTATCTCGTCTCGTCTGGACGCAGACCGATATGGAACACATCAGGG
AGAGTGCATCCCTTGTTGCGAAGCTGATTGAGCTGCTGGAGCCAGCACAGGCACTGAAGGAGATGTTTGGACTGAACTTC
ACACTAGCTCCCCGATCTGAACGGCGATCCTTCGGCCTTCTAGGTACCTGAAAGAATTGCACATTGTGACCGGCAAAACG
ATGGCCCATACGATGACAATGACAACATGGAGGTAGAAGAACACGTAGTACAGGAGGTTGACTTGTTTGGAGAGGAATTG
CTCCCCAGCACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20403.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis