Browse Element(s) Details


Os.52106.1.S1_at

Description gb:AK065868.1
DB_XREF= gi:32975886
TID=Os.52106.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043F09, full insert sequence.
FL= gb:AK065868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5145011/11mTERF family protein, expressed
LOC_Os08g434001/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51420Os.5743.1.S1_at11/112+31491247..31492852expressed protein
LOC_Os02g51430Os.11055.1.S1_at11/112+31495160..31506551SEC6, putative, expressed
LOC_Os02g51440OsAffx.30603.3.S1_at11/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.2.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51440OsAffx.30603.4.S1_x_at1/112+31509649..31511796Multicopper oxidase family protein
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52106.1.S1_at--999--7471Chr02:31516538..31516562 (25 bp)
GTGTGTCTCACTTCCATTGGATAAC
LOC_Os02g51450
Os.52106.1.S1_at--399--2051Chr02:31516547..31516571 (25 bp)
ACTTCCATTGGATAACTTCATTCTA
LOC_Os02g51450
Os.52106.1.S1_at--907--7951Chr02:31516556..31516580 (25 bp)
GGATAACTTCATTCTACTGATCAAC
LOC_Os02g51450
Os.52106.1.S1_at--144--111Chr02:31516566..31516590 (25 bp)
ATTCTACTGATCAACTATAGCAGGG
LOC_Os02g51450
Os.52106.1.S1_at--807--2031Chr02:31516579..31516603 (25 bp)
ACTATAGCAGGGATGGCAGATTCAA
LOC_Os02g51450
Os.52106.1.S1_at--347--8271Chr02:31516593..31516617 (25 bp)
GGCAGATTCAATTCATGGTCATTTT
LOC_Os02g51450
Os.52106.1.S1_at--542--9631Chr02:31516605..31516629 (25 bp)
TCATGGTCATTTTAGTGTAGGTTTC
LOC_Os02g51450
Os.52106.1.S1_at--401--1111Chr02:31516618..31516642 (25 bp)
AGTGTAGGTTTCTTGCAGTTGACAA
LOC_Os02g51450
Os.52106.1.S1_at--1004--7511Chr02:31516647..31516671 (25 bp)
GTGGATGTGTATAACAACCTTGAGA
LOC_Os02g51450
Os.52106.1.S1_at--863--2612Chr02:31516662..31516686 (25 bp)
AACCTTGAGAACTGTTCAGTTGTGG
LOC_Os02g51450
Os.52106.1.S1_at--580--9651Chr02:31516677..31516701 (25 bp)
TCAGTTGTGGTTGAACAATGTTCAG
LOC_Os02g51450
Target Sequence 
GTGTGTCTCACTTCCATTGGATAACTTCATTCTACTGATCAACTATAGCAGGGATGGCAGATTCAATTCATGGTCATTTT
AGTGTAGGTTTCTTGCAGTTGACAAGGAGGTGGATGTGTATAACAACCTTGAGAACTGTTCAGTTGTGGTTGAACAATGT
TCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis