Browse Element(s) Details


OsAffx.24825.1.S1_at

Description tigr:9630.m05061
TID=OsAffx.24825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5151011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51450Os.52106.1.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51450Os.52106.2.S1_at11/112+31515232..31517195mTERF family protein, expressed
LOC_Os02g51460Os.50994.1.S1_at11/112+31517549..31518937mTERF family protein, expressed
LOC_Os02g51470Os.51517.1.A1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51470Os.15071.2.S1_s_at11/112+31521055..31522660ATP synthase delta chain, chloroplast precursor, putative, expressed
LOC_Os02g51480Os.24663.1.S1_s_at11/112+31523730..31525984pentatricopeptide, putative, expressed
LOC_Os02g51490Os.49186.1.S1_at11/112+31526241..31529003expressed protein
LOC_Os02g51500Os.16541.1.S1_at10/112+31529444..31532901NTGP5, putative, expressed
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.5.S1_x_at4/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.2.S1_x_at3/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51540Os.6133.1.S2_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51540Os.6133.1.S1_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24825.1.S1_at--401--4151Chr02:31538514..31538538 (25 bp)
CGCGATGAGGCGGACGTGCACCAAA
LOC_Os02g51510
OsAffx.24825.1.S1_at--678--4371Chr02:31538534..31538558 (25 bp)
CCAAAGACGGGAGGCTCGTGGTCAC
LOC_Os02g51510
OsAffx.24825.1.S1_at--545--4551Chr02:31538573..31538597 (25 bp)
GCGCCAGGCGGCGTCACGAGTACAT
LOC_Os02g51510
OsAffx.24825.1.S1_at--298--3991Chr02:31538616..31538640 (25 bp)
CGGGCGCGTGACAATGCAGCTCGTC
LOC_Os02g51510
OsAffx.24825.1.S1_at--370--6011Chr02:31538641..31538665 (25 bp)
GAGAGCAAGGACTTCTACCCGTGTC
LOC_Os02g51510
OsAffx.24825.1.S1_at--275--51Chr02:31538701..31538725 (25 bp)
ATTGTCAATGTCACGCAAGCGGTCA
LOC_Os02g51510
OsAffx.24825.1.S1_at--1128--2671Chr02:31538717..31538741 (25 bp)
AAGCGGTCAGCGACACGTCGACAGC
LOC_Os02g51510
OsAffx.24825.1.S1_at--916--2151Chr02:31538737..31538761 (25 bp)
ACAGCGGCGGCAACCGTAGGAGAAT
LOC_Os02g51510
OsAffx.24825.1.S1_at--1029--8051Chr02:31538755..31538779 (25 bp)
GGAGAATGCGATCCTGGCCACATGC
LOC_Os02g51510
OsAffx.24825.1.S1_at--308--31Chr02:31538824..31538848 (25 bp)
ATTGGATGCTTCGAGGACGTGGTCA
LOC_Os02g51510
OsAffx.24825.1.S1_at--123--8591Chr02:31538843..31538867 (25 bp)
TGGTCAAGTACCACTCGATCGGGAG
LOC_Os02g51510
Target Sequence 
CGCGATGAGGCGGACGTGCACCAAAGACGGGAGGCTCGTGGTCACCGAAGCGCCCGCCGGCGCCAGGCGGCGTCACGAGT
ACATCCGCGCGCGCCGCCGGGGCGGGCGCGTGACAATGCAGCTCGTCGAGAGCAAGGACTTCTACCCGTGTCCGTCGCCG
GTGGAAGAGGACGACGACGACGACGACATTGTCAATGTCACGCAAGCGGTCAGCGACACGTCGACAGCGGCGGCAACCGT
AGGAGAATGCGATCCTGGCCACATGCAGAAGGCGCCGGCGACGGCGCCACCTCCGCCATCGCCGCCATCCATTGGATGCT
TCGAGGACGTGGTCAAGTACCACTCGATCGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis