Browse Element(s) Details


Os.6133.1.S1_at

Description gb:AK070999.1
DB_XREF= gi:32981022
TID=Os.6133.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079A01, full insert sequence.
FL= gb:AK120012.1 gb:AK070999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5154011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51510OsAffx.24825.1.S1_at11/112+31538227..31538910hypothetical protein
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.5.S1_x_at4/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.2.S1_x_at3/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51540Os.6133.1.S2_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51540Os.6133.1.S1_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51550OsAffx.24826.1.S1_at11/112+31570121..31571386expressed protein
LOC_Os02g51560OsAffx.12595.1.S1_at11/112+31573715..31574042hypothetical protein
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6133.1.S1_at--623--8331Chr02:31563014..31563038 (25 bp)
GGCTGTTAATCCTATACTTCCATTT
LOC_Os02g51540
Os.6133.1.S1_at--1124--10271Chr02:31563855..31563879 (25 bp)
TTTGCTTAGCAGTACTACCATCACC
LOC_Os02g51540
Os.6133.1.S1_at--524--9971Chr02:31563870..31563894 (25 bp)
TACCATCACCTGAACCTGTTGGGAT
LOC_Os02g51540
Os.6133.1.S1_at--259--6991Chr02:31564042..31564148 (25 bp)
GTACCGCTCTGAATGCCATGATCTT
LOC_Os02g51540
Os.6133.1.S1_at--1142--8831Chr02:31564142..31564166 (25 bp)
TGATCTTGACAACAGCACGACGGTG
LOC_Os02g51540
Os.6133.1.S1_at--224--8711Chr02:31564165..31564189 (25 bp)
TGTCCTTAGGTCCATCACAGCATAA
LOC_Os02g51540
Os.6133.1.S1_at--287--10731Chr02:31564303..31564327 (25 bp)
TTGCTAACTCTAACATGCTGCTCTT
LOC_Os02g51540
Os.6133.1.S1_at--227--631Chr02:31564317..31564341 (25 bp)
ATGCTGCTCTTACTGACTATGTCCG
LOC_Os02g51540
Os.6133.1.S1_at--769--771Chr02:31564335..31564359 (25 bp)
ATGTCCGTGTTCTTCATCTCATGAA
LOC_Os02g51540
Os.6133.1.S1_at--917--6911Chr02:31564403..31564427 (25 bp)
GTATGTGCCTCGTATATGCCTATAT
LOC_Os02g51540
Os.6133.1.S1_at--314--6471Chr02:31564492..31564516 (25 bp)
GATAAGTCGTTTCCTGCGTGCACTG
LOC_Os02g51540
Target Sequence 
GGCTGTTAATCCTATACTTCCATTTAATGACAGACAGGGAGAATTTGCTGTCTTTTGCTTAGCAGTACTACCATCACCTG
AACCTGTTGGGATTATTGGGCAGAATTTCATGGTTGGCTATCACGTAGTTTTTGACAGAGAAAATATGAAGCTGGGCTGG
TACCGCTCTGAATGCCATGATCTTGACAACAGCACGACGGTGTCCTTAGGTCCATCACAGCATAACAGTCCAGAGGACCC
CCTACCGTCAAACGAGCAGCAGACCTCTCCGGCTGTCACGCCGGCTGTCGCAGGCAGGGCTCCGTCCTCTGGCGGATCGA
CGACTCTGCAGAACCTACTTGCTAACTCTAACATGCTGCTCTTACTGACTATGTCCGTGTTCTTCATCTCATGAACAACT
CGCTGACAATGATCTAACTTATAGTAGCTCTGTAAATTGTATGTGCCTCGTATATGCCTATATGGTGTCTTTTTGTTGCT
TAGAGAGCTCAGTAAATCAGCAGCTGCATGCTTCTGGGTGCCGTGCCGATAAGTCGTTTCCTGCGTGCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis