Browse Element(s) Details


Os.31312.2.S1_x_at

Description gb:NM_193412.1
DB_XREF= gi:34913907
GEN=OSJNBa0024F24.28
TID=Os.31312.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0024F24.28 (OSJNBa0024F24.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0024F24.28 (OSJNBa0024F24.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3708011/11retrotransposon protein, putative, unclassified
LOC_Os01g646105/11retrotransposon protein, putative, unclassified
LOC_Os08g335605/11retrotransposon protein, putative, unclassified
LOC_Os04g120305/11retrotransposon protein, putative, unclassified
LOC_Os09g371605/11retrotransposon protein, putative, unclassified
LOC_Os07g156304/11retrotransposon protein, putative, unclassified
LOC_Os06g141504/11retrotransposon protein, putative, unclassified
LOC_Os09g400304/11retrotransposon protein, putative, unclassified
LOC_Os04g592804/11retrotransposon protein, putative, unclassified
LOC_Os12g030004/11retrotransposon protein, putative, unclassified
LOC_Os06g280904/11retrotransposon protein, putative, unclassified
LOC_Os02g536304/11retrotransposon protein, putative, unclassified
LOC_Os09g040804/11retrotransposon protein, putative, unclassified
LOC_Os09g398904/11retrotransposon protein, putative, unclassified
LOC_Os01g742204/11retrotransposon protein, putative, unclassified
LOC_Os04g555404/11retrotransposon protein, putative, unclassified
LOC_Os04g449704/11retrotransposon protein, putative, unclassified
LOC_Os01g746904/11retrotransposon protein, putative, unclassified
LOC_Os03g023604/11retrotransposon protein, putative, unclassified
LOC_Os08g369404/11retrotransposon protein, putative, unclassified
LOC_Os06g422004/11retrotransposon protein, putative, unclassified
LOC_Os04g102704/11retrotransposon protein, putative, unclassified
LOC_Os03g538204/11retrotransposon protein, putative, unclassified
LOC_Os04g098304/11retrotransposon protein, putative, unclassified, expressed
LOC_Os11g094104/11retrotransposon protein, putative, unclassified
LOC_Os06g050304/11retrotransposon protein, putative, unclassified
LOC_Os11g203004/11retrotransposon protein, putative, unclassified
LOC_Os11g092504/11retrotransposon protein, putative, unclassified
LOC_Os10g361404/11retrotransposon protein, putative, unclassified
LOC_Os06g481004/11retrotransposon protein, putative, unclassified
LOC_Os02g440604/11retrotransposon protein, putative, unclassified
LOC_Os05g244704/11retrotransposon protein, putative, unclassified
LOC_Os09g086304/11retrotransposon protein, putative, unclassified
LOC_Os02g202604/11retrotransposon protein, putative, unclassified
LOC_Os09g400604/11retrotransposon protein, putative, unclassified
LOC_Os06g499604/11retrotransposon protein, putative, unclassified
LOC_Os11g136103/11retrotransposon protein, putative, unclassified
LOC_Os02g515303/11retrotransposon protein, putative, unclassified
LOC_Os11g031003/11retrotransposon protein, putative, unclassified
LOC_Os06g068403/11transposon protein, putative, unclassified
LOC_Os01g546503/11retrotransposon protein, putative, unclassified
LOC_Os06g178103/11retrotransposon protein, putative, unclassified
LOC_Os07g417703/11retrotransposon protein, putative, unclassified
LOC_Os04g393902/11retrotransposon protein, putative, unclassified
LOC_Os06g058402/11retrotransposon protein, putative, unclassified
LOC_Os09g400182/11retrotransposon protein, putative, unclassified
LOC_Os11g319102/11retrotransposon protein, putative, unclassified
LOC_Os12g284002/11retrotransposon protein, putative, unclassified
LOC_Os12g262502/11retrotransposon protein, putative, unclassified
LOC_Os09g400852/11retrotransposon protein, putative, unclassified
LOC_Os04g174302/11retrotransposon protein, putative, unclassified
LOC_Os08g145602/11retrotransposon protein, putative, unclassified
LOC_Os09g400102/11retrotransposon protein, putative, unclassified
LOC_Os09g037002/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g027002/11retrotransposon protein, putative, unclassified
LOC_Os02g443902/11retrotransposon protein, putative, unclassified
LOC_Os01g123502/11retrotransposon protein, putative, unclassified
LOC_Os07g303502/11retrotransposon protein, putative, unclassified
LOC_Os10g166702/11retrotransposon protein, putative, unclassified
LOC_Os11g474202/11retrotransposon protein, putative, unclassified
LOC_Os02g566602/11retrotransposon protein, putative, unclassified
LOC_Os02g014002/11retrotransposon protein, putative, unclassified
LOC_Os10g354001/11retrotransposon protein, putative, unclassified
LOC_Os01g471601/11retrotransposon protein, putative, unclassified
LOC_Os07g308901/11transposon protein, putative, unclassified
LOC_Os03g211901/11retrotransposon protein, putative, unclassified
LOC_Os04g538801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37050Os.15440.1.S1_at11/111+20992309..20997850RNase3 domain containing protein, expressed
LOC_Os01g37054NANA1+20998634..20999272NA
LOC_Os01g37060NANA1+21002911..21009660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37070OsAffx.22492.1.S1_x_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37070OsAffx.22492.1.S1_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.2.S1_x_at11/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.5.S1_x_at4/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37090NANA1+21027461..21029659expressed protein
LOC_Os01g37100OsAffx.21236.1.S1_at11/111+21032597..21034255RWP-RK domain containing protein, expressed
LOC_Os01g37110OsAffx.23536.2.S1_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37110OsAffx.23536.1.S1_s_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37120Os.32193.2.S1_x_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37120Os.32193.1.S1_at10/111+21043881..21049101transducin family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31312.2.S1_x_at--737--39758Chr12:1118519..1118543 (25 bp)
CGGTCGGCAAGTGGGCCTCTGGAGA
LOC_Os12g03000
Os.31312.2.S1_x_at--293--84359Chr12:1118532..1118556 (25 bp)
GGCCTCTGGAGAGGGCGGACCGTAA
LOC_Os12g03000
Os.31312.2.S1_x_at--757--1071Chr01:21019334..21019358 (25 bp)
AGGGACCCCAATTTCTCTCTATGGA
LOC_Os01g37080
Os.31312.2.S1_x_at--365--8091Chr01:21019332..21019356 (25 bp)
GGACCCCAATTTCTCTCTATGGATG
LOC_Os01g37080
Os.31312.2.S1_x_at--33--1811Chr01:21019330..21019354 (25 bp)
ACCCCAATTTCTCTCTATGGATGGC
LOC_Os01g37080
Os.31312.2.S1_x_at--559--4171Chr01:21019328..21019352 (25 bp)
CCCAATTTCTCTCTATGGATGGCGC
LOC_Os01g37080
Os.31312.2.S1_x_at--27--191Chr01:21019324..21019348 (25 bp)
ATTTCTCTCTATGGATGGCGCTGGA
LOC_Os01g37080
Os.31312.2.S1_x_at--662--9511Chr01:21019321..21019345 (25 bp)
TCTCTCTATGGATGGCGCTGGATGA
LOC_Os01g37080
Os.31312.2.S1_x_at--320--93116Chr11:18257534..18257553 (20 bp)
TCCCTCCTGGGACCGAGGACCGTGC
LOC_Os11g31910
Os.31312.2.S1_x_at--991--31949Chr12:1118873..1118897 (25 bp)
CAATGCCGGTGGTGCAGACGACAGT
LOC_Os12g03000
Os.31312.2.S1_x_at--787--44953Chr12:1118877..1118901 (25 bp)
GCCGGTGGTGCAGACGACAGTGACG
LOC_Os12g03000
Target Sequence 
CGGTCGGCAAGTGGGCCTCTGGAGAGGGCGGACCGTAAAGTACGCCGCCAACCAGGGAGGTCTCGCCCAGCGCCTCTCGA
AGATGGCCGNNGNTCTCCAACGGCTCCCCGAGGAGCTCGAGAAGACAATTAAGTCATCCTCGAGGGACCTCGCCCAAGGA
GCGGTGGAGCTCGTCCTGGCGAGTTACCAGGCCAGGGACCCCAATTTCTCTCTATGGATGGCGCTGGATGAGTTCCCTCC
TGGGACCGAGGACCGTGCGCGCGCGCAGGTCCGGGATGCCGCCGACCATATCGTCGACAGCTTCGAGGGCTCGGCCCCTC
GACTCGCGTTCGCCCCCAACTCCGACGAGGAGGGCAATGCCGGTGGTGCAGACGACAGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31312.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis