Browse Element(s) Details


Os.32193.1.S1_at

Description gb:AK111932.1
DB_XREF= gi:37988595
TID=Os.32193.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0066C06.9 (OSJNBa0066C06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C12, full insert sequence.
FL= gb:AK105617.1 gb:AK111932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3712010/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37080Os.31312.2.S1_x_at11/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.5.S1_x_at4/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37090NANA1+21027461..21029659expressed protein
LOC_Os01g37100OsAffx.21236.1.S1_at11/111+21032597..21034255RWP-RK domain containing protein, expressed
LOC_Os01g37110OsAffx.23536.2.S1_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37110OsAffx.23536.1.S1_s_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37120Os.32193.2.S1_x_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37120Os.32193.1.S1_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37130Os.15194.1.S1_at8/111+21065437..21069274Protein phosphatase 2C PPH1, putative, expressed
LOC_Os01g37140OsAffx.21235.1.S1_at11/111+21071144..21072632retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32193.1.S1_at--1044--5191Chr01:21044430..21044454 (25 bp)
GCAATTTTGTTTTCCCATGAGATGT
LOC_Os01g37120
Os.32193.1.S1_at--856--2311Chr01:21044317..21044341 (25 bp)
AAAGGTACTCCTGTTAGCTGTCTGG
LOC_Os01g37120
Os.32193.1.S1_at--845--8171Chr01:21044281..21044305 (25 bp)
GGAACTCGCGTCTTGTATGCGGTAG
LOC_Os01g37120
Os.32193.1.S1_at--1038--6531Chr01:21044242..21044266 (25 bp)
GATTTTTGTTTGTCCATGCATGTCC
LOC_Os01g37120
Os.32193.1.S1_at--114--8971Chr01:21044065..21044089 (25 bp)
TGAAATTGCTAAACTCTTTTGCTGA
LOC_Os01g37120
Os.32193.1.S1_at--186--2551Chr01:21044054..21044078 (25 bp)
AACTCTTTTGCTGATTCATGCTATA
LOC_Os01g37120
Os.32193.1.S1_at--71--10191Chr01:21044033..21044057 (25 bp)
TATAGACATATAGGCGGTGGCAACT
LOC_Os01g37120
Os.32193.1.S1_at--862--9631Chr01:21044003..21044027 (25 bp)
TCAGGCTGACTCTCTACATTTATGT
LOC_Os01g37120
Os.32193.1.S1_at--700--7051Chr01:21043904..21043928 (25 bp)
GTAACATGTAATTGGCTCGCTCAGT
LOC_Os01g37120
Os.32193.1.S1_at--993--11Chr01:21043894..21043918 (25 bp)
ATTGGCTCGCTCAGTTATTATTTAG
LOC_Os01g37120
Os.32193.1.S1_at--888--6791Chr01:21043881..21043905 (25 bp)
GTTATTATTTAGCTGTACCCAATGC
NONE
Target Sequence 
GCAATTTTGTTTTCCCATGAGATGTTTTGCTGTTGCAAGGGANGGCATAGCAAGAATGTAGCCATAAAGTAAGAGCTGGG
CAGAATCTGAACAGTTTAATGGGATTTGTATACAAAGGTACTCCTGTTAGCTGTCTGGATGTGGGGCATGGAACTCGCGT
CTTGTATGCGGTAGGTCATGTAGGTGTNGATTTTTGTTTGTCCATGCATGTCCATTATATATACAAGGAAATGCAANAAT
TTTCCATAAATCTGGATANCATTGTTTATTTGTTTACCANGGATGACAATGNATTAACATGCAAGGCTGTAAACTAGNAG
GGGTGACATACTATACNATCATTTTCTCTTGTGGTCTTNTTNCACTTGTATGAAATTGCTAAACTCTTTTGCTGATTCAT
GCTATAGACATATAGGCGGTGGCAACTAGACNTCAGGCTGACTCTCTACATTTATGTGGATCATATTTTAAGAGAATGAA
TTTTATGTATAGTATCATATGATGTAACATCTTTTTTTTCTGAAGATTAATGTAACATGTAATTGGCTCGCTCAGTTATT
ATTTAGCTGTACCCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis