Browse Element(s) Details


OsAffx.23536.2.S1_at

Description tigr:9629.m03511
TID=OsAffx.23536.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3711011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37070OsAffx.22492.1.S1_x_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37070OsAffx.22492.1.S1_at1/111+21012162..21018509retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.2.S1_x_at11/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37080Os.31312.5.S1_x_at4/111+21019137..21022480retrotransposon protein, putative, unclassified
LOC_Os01g37090NANA1+21027461..21029659expressed protein
LOC_Os01g37100OsAffx.21236.1.S1_at11/111+21032597..21034255RWP-RK domain containing protein, expressed
LOC_Os01g37110OsAffx.23536.2.S1_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37110OsAffx.23536.1.S1_s_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37120Os.32193.2.S1_x_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37120Os.32193.1.S1_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37130Os.15194.1.S1_at8/111+21065437..21069274Protein phosphatase 2C PPH1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23536.2.S1_at--942--2331Chr01:21042654..21042676 (23 bp)
AAAGAGAAGCAACCTTCATTCAGCA
LOC_Os01g37110
OsAffx.23536.2.S1_at--537--4311Chr01:21042666..21042774 (25 bp)
CCTTCATTCAGCAAGCTTCGGTCGA
LOC_Os01g37110
OsAffx.23536.2.S1_at--930--9951Chr01:21042844..21043046 (25 bp)
TACCCACCAAACGAGCAGATAAGAG
LOC_Os01g37110
OsAffx.23536.2.S1_at--1102--1311Chr01:21043043..21043067 (25 bp)
AGAGGTCAGAATCGCCAATTCCCAG
LOC_Os01g37110
OsAffx.23536.2.S1_at--745--1451Chr01:21043050..21043074 (25 bp)
AGAATCGCCAATTCCCAGGACCACG
LOC_Os01g37110
OsAffx.23536.2.S1_at--305--971Chr01:21043066..21043090 (25 bp)
AGGACCACGCCACTCACAAGGTCTG
LOC_Os01g37110
OsAffx.23536.2.S1_at--358--4411Chr01:21043074..21043098 (25 bp)
GCCACTCACAAGGTCTGGATCACTT
LOC_Os01g37110
OsAffx.23536.2.S1_at--316--2231Chr01:21043081..21043105 (25 bp)
ACAAGGTCTGGATCACTTCCACAAA
LOC_Os01g37110
OsAffx.23536.2.S1_at--502--3891Chr01:21043088..21043112 (25 bp)
CTGGATCACTTCCACAAAAGCCATC
LOC_Os01g37110
OsAffx.23536.2.S1_at--788--2651Chr01:21043105..21043129 (25 bp)
AAGCCATCCTTGTTGAAAACTTCAA
LOC_Os01g37110
OsAffx.23536.2.S1_at--999--2411Chr01:21043120..21043143 (24 bp)
AAAACTTCAAGTGTCAGAGTTCAGA
LOC_Os01g37110
Target Sequence 
AAAGAGAAGCAACCTTCATTCAGCAAGCTTCGGTCGATCGCCCGTGCACCTTCGCAACGTGCACGCTCGTCGTCACCAGC
ACAGCGCCCACCTTCTGAGAATACAATACCCACCAAACGAGCAGATAAGAGGTCAGAATCGCCAATTCCCAGGACCACGC
CACTCACAAGGTCTGGATCACTTCCACAAAAGCCATCCTTGTTGAAAACTTCAAGTGTCAGAGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23536.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis