Browse Element(s) Details


Os.15194.1.S1_at

Description gb:AK106278.1
DB_XREF= gi:32991487
TID=Os.15194.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase-2C (OSJNBa0066C06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H07, full insert sequence.
FL= gb:AK106278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g371308/11Protein phosphatase 2C PPH1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37110OsAffx.23536.2.S1_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37110OsAffx.23536.1.S1_s_at11/111+21041191..21043408hypothetical protein
LOC_Os01g37120Os.32193.2.S1_x_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37120Os.32193.1.S1_at10/111+21043881..21049101transducin family protein, putative, expressed
LOC_Os01g37130Os.15194.1.S1_at8/111+21065437..21069274Protein phosphatase 2C PPH1, putative, expressed
LOC_Os01g37140OsAffx.21235.1.S1_at11/111+21071144..21072632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37160OsAffx.8993.1.S1_at11/111+21082203..21083244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37170NANA1+21087422..21088454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37180NANA1+21092951..21093304hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15194.1.S1_at--453--6271Chr01:21068403..21068520 (25 bp)
GATGTCCAGGTTGCCTGTGAGGCAC
LOC_Os01g37130
Os.15194.1.S1_at--123--8891Chr01:21068513..21068537 (25 bp)
TGAGGCACTTGGTCAGATAGCTCTG
LOC_Os01g37130
Os.15194.1.S1_at--481--6491Chr01:21068528..21068687 (25 bp)
GATAGCTCTGGATCGTCGGTCGCAA
LOC_Os01g37130
Os.15194.1.S1_at--309--971NONE
AGGAGCTGCCTGTTCAAAGGCCAAA
NONE
Os.15194.1.S1_at--1111--6531Chr01:21069051..21069075 (25 bp)
GATTTATATTTCATCGCTCCTTGCG
LOC_Os01g37130
Os.15194.1.S1_at--283--4791Chr01:21069066..21069090 (25 bp)
GCTCCTTGCGTTGCAGTAGGCCTAG
LOC_Os01g37130
Os.15194.1.S1_at--1087--6911NONE
GTAGGCCTAGCTAGTTCTTTCAAGT
NONE
Os.15194.1.S1_at--548--7011Chr01:21069113..21069137 (25 bp)
GTACTTACAGTTTTACGGTCTGCAA
LOC_Os01g37130
Os.15194.1.S1_at--366--1931Chr01:21069127..21069151 (25 bp)
ACGGTCTGCAACTTCTAGCTGCAAA
LOC_Os01g37130
Os.15194.1.S1_at--133--9011Chr01:21069192..21069216 (25 bp)
TGAATATGTACTTCAGCTCCTGCTG
LOC_Os01g37130
Os.15194.1.S1_at--369--9291NONE
TCCGTCGATTTACCCAGTCATTTTT
NONE
Target Sequence 
GATGTCCAGGTTGCCTGTGAGGCACTTGGTCAGATAGCTCTGGATCGTCGGTCGCAAGACAACATTAGTATAGTCATAGC
TGACTTGGGGAGGACAAACTGGAAGGAGCTGCCTGTTCAAAGGCCAAATTTATTCTTGGAGTTAACTCAAGCAGTTGCAA
CAGTTGGGGCCGTCTCATTAGGGATTTATATTTCATCGCTCCTTGCGTTGCAGTAGGCCTAGCTAGTTCTTTCAAGTGTG
TATAGTACTTACAGTTTTACGGTCTGCAACTTCTAGCTGCAAATAATGTACATTCTTATAGGGTAAATGCATAGGATATC
CGTTGAATATGTACTTCAGCTCCTGCTGGCCAAGATATTAATGGGGCTCTTTTTTTNTTTTCTGGAAGNTCCTTTGATTC
ANNNNANNAANNNANNANATCGAAGAGTTACTCCCTCCGTCGATTTACCCAGTCATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis