Browse Element(s) Details


OsAffx.8993.1.S1_at

Description gb:NM_193421.1
DB_XREF= gi:34913925
GEN=OSJNBa0066C06.14
TID=OsAffx.8993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066C06.14 (OSJNBa0066C06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3716011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37130Os.15194.1.S1_at8/111+21065437..21069274Protein phosphatase 2C PPH1, putative, expressed
LOC_Os01g37140OsAffx.21235.1.S1_at11/111+21071144..21072632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37160OsAffx.8993.1.S1_at11/111+21082203..21083244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37170NANA1+21087422..21088454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37180NANA1+21092951..21093304hypothetical protein
LOC_Os01g37200Os.55279.1.S1_at9/111+21102531..21102946expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8993.1.S1_at--1111--10332Chr03:27147766..27147861 (24 bp)
TTTTTGGCAAGGGTGACACCGTAAG
NONE
OsAffx.8993.1.S1_at--1120--7891Chr01:21082893..21082917 (25 bp)
GGTTGACATGCTGTATCGATATAAT
LOC_Os01g37160
OsAffx.8993.1.S1_at--541--3011Chr01:21082915..21082939 (25 bp)
AATGCAATTCTTGGGAGATCAGCGA
LOC_Os01g37160
OsAffx.8993.1.S1_at--289--6451Chr01:21082931..21082955 (25 bp)
GATCAGCGATGAACATATTTGAAGC
LOC_Os01g37160
OsAffx.8993.1.S1_at--205--5391Chr01:21082951..21082975 (25 bp)
GAAGCAATCATCCACCATAATTACA
LOC_Os01g37160
OsAffx.8993.1.S1_at--959--231Chr01:21082975..21082999 (25 bp)
ATACGCATGAAACTTCCGGGACCAA
LOC_Os01g37160
OsAffx.8993.1.S1_at--557--1111Chr01:21083004..21083028 (25 bp)
AGTGATAACTATCCGAGGTGCTCAG
LOC_Os01g37160
OsAffx.8993.1.S1_at--667--6131Chr01:21083018..21083042 (25 bp)
GAGGTGCTCAGCTAGCGGCAAGAAA
LOC_Os01g37160
OsAffx.8993.1.S1_at--507--5471Chr01:21083047..21083071 (25 bp)
GAACTTCAAGGAACAACAAGCGTGA
LOC_Os01g37160
OsAffx.8993.1.S1_at--152--3011Chr01:21083115..21083139 (25 bp)
AATGCAAAAGCCAGTCCCAGAAGGG
LOC_Os01g37160
OsAffx.8993.1.S1_at--19--10871Chr01:21083158..21083182 (25 bp)
TTGGATGAAAACGACCTGGGAAAAT
LOC_Os01g37160
Target Sequence 
TTTTTGGCAAGGGTGACACCGTAAGAAAGGAGGAAATAGTGTTTGATGTGGTTGACATGCTGTATCGATATAATGCAATT
CTTGGGAGATCAGCGATGAACATATTTGAAGCAATCATCCACCATAATTACATACGCATGAAACTTCCGGGACCAAGGGG
AGTGATAACTATCCGAGGTGCTCAGCTAGCGGCAAGAAAGTTTGAACTTCAAGGAACAACAAGCGTGAAAGGGGTACATG
TAGTTGATCAAAAACATAGTGAATACTTGAAAATGCAAAAGCCAGTCCCAGAAGGGAAAACTAAGAAAGTACTATTGGAT
GAAAACGACCTGGGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis