Browse Element(s) Details


Os.55279.1.S1_at

Description gb:AK107790.1
DB_XREF= gi:32992999
TID=Os.55279.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55279 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D04, full insert sequence.
FL= gb:AK107790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g372009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37160OsAffx.8993.1.S1_at11/111+21082203..21083244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37170NANA1+21087422..21088454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37180NANA1+21092951..21093304hypothetical protein
LOC_Os01g37200Os.55279.1.S1_at9/111+21102531..21102946expressed protein
LOC_Os01g37210Os.40907.2.S1_at11/111+21110362..21113499expressed protein
LOC_Os01g37220NANA1+21118120..21118347hypothetical protein
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55279.1.S1_at--505--3031Chr01:21102881..21102905 (25 bp)
AATGCCGGCCGCTGGTCGATCTCTT
LOC_Os01g37200
Os.55279.1.S1_at--1048--7191Chr01:21102867..21102891 (25 bp)
GTCGATCTCTTTCACCGGAGCCCTG
LOC_Os01g37200
Os.55279.1.S1_at--577--10332Chr02:17314611..17314635 (25 bp)
TTTTACCGGCCGAAACTGAGCTCGT
NONE
Os.55279.1.S1_at--1028--9952Chr02:17314614..17314638 (25 bp)
TACCGGCCGAAACTGAGCTCGTATT
NONE
Os.55279.1.S1_at--1026--4132Chr02:17314620..17314644 (25 bp)
CCGAAACTGAGCTCGTATTGTCGCC
NONE
Os.55279.1.S1_at--855--4651NONE
GCGTCGACCGGGAACACGATATGCC
NONE
Os.55279.1.S1_at--738--5811NONE
GACCGGGAACACGATATGCCGCCGA
NONE
Os.55279.1.S1_at--899--7233Chr01:19429280..19429669 (25 bp)
GTCGCCGCACTTTGGCCACTGGAAG
NONE
Os.55279.1.S1_at--94--3333Chr02:17314735..17314758 (24 bp)
CACTTTGGCCACTGGAAGCCCGGCG
NONE
Os.55279.1.S1_at--987--9512Chr10:7646014..7646038 (25 bp)
TCTCTCTCGGCTCCTAACTGAAGAG
NONE
Os.55279.1.S1_at--874--9512Chr10:7646014..7646036 (23 bp)
TCTCTCGGCTCCTAACTGAAGAGGG
NONE
Target Sequence 
AATGCCGGCCGCTGGTCGATCTCTTTCACCGGAGCCCTGCCGCCCAAGCCCTCGCGCCACTACCTTCGCCTCGATGAGGC
AAATCCATTCCCCTACTTTCCCCTTCCTTTTCCCCTCCGAGATAAGCCACCACCGCCGCCACTTTTACCGGCCGAAACTG
AGCTCGTATTGTCGCCGTTCCGGCCGTTTTAACCTTCCTCTCTACCAGCCACCAACCTCCCCGAGTGCGCGTCGACCGGG
AACACGATATGCCGCCGACGTCGCCGCACTTTGGCCACTGGAAGCCCGGCGCCCCGCTCGCCCTTTTCTCACCCTCTCTC
TCGGCTCCTAACTGAAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis