Browse Element(s) Details


Os.40907.2.S1_at

Description gb:NM_193423.1
DB_XREF= gi:34913929
GEN=OSJNBa0066C06.17
TID=Os.40907.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0066C06.17 (OSJNBa0066C06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066C06.17 (OSJNBa0066C06.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3721011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37170NANA1+21087422..21088454retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37180NANA1+21092951..21093304hypothetical protein
LOC_Os01g37200Os.55279.1.S1_at9/111+21102531..21102946expressed protein
LOC_Os01g37210Os.40907.2.S1_at11/111+21110362..21113499expressed protein
LOC_Os01g37220NANA1+21118120..21118347hypothetical protein
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40907.2.S1_at--835--7971Chr01:21110912..21110936 (25 bp)
GGATCGCGATGCAACGGCTTCAAGA
LOC_Os01g37210
Os.40907.2.S1_at--972--7451Chr01:21110852..21110876 (25 bp)
GTGTCCGAAGGATTGCTCATGAACT
LOC_Os01g37210
Os.40907.2.S1_at--318--4831Chr01:21110838..21110862 (25 bp)
GCTCATGAACTACTTGGAATTGCCA
LOC_Os01g37210
Os.40907.2.S1_at--17--1811Chr01:21110782..21110806 (25 bp)
ACCCTTACCGGCAGCTGAGGATGGA
LOC_Os01g37210
Os.40907.2.S1_at--785--2851Chr01:21110736..21110760 (25 bp)
AAGTGCCACGCAAAGAAGCTCCGGA
LOC_Os01g37210
Os.40907.2.S1_at--1139--6071Chr01:21110684..21110708 (25 bp)
GAGTAGTGCCGCTCGTCTGGGCAAA
LOC_Os01g37210
Os.40907.2.S1_at--196--8091Chr01:21110656..21110680 (25 bp)
GGAGCCGATGCCAATGATCACGTCA
LOC_Os01g37210
Os.40907.2.S1_at--609--5971Chr01:21110626..21110650 (25 bp)
GAGAACCATCAAGTCGAACGCGAGA
LOC_Os01g37210
Os.40907.2.S1_at--200--2611Chr01:21110610..21110634 (25 bp)
AACGCGAGATTCACGGGTCCTGAGT
LOC_Os01g37210
Os.40907.2.S1_at--1092--431Chr01:21110549..21110573 (25 bp)
ATCTATTCTCCTATCGTTTGTTCCC
LOC_Os01g37210
Os.40907.2.S1_at--788--6891Chr01:21110429..21110453 (25 bp)
GTATCATCATCTGAGTCACCTTATG
LOC_Os01g37210
Target Sequence 
GGATCGCGATGCAACGGCTTCAAGACGATCTGCAGAAAAAACACCATGGAAGTCAGCACAGTGTCCGAAGGATTGCTCAT
GAACTACTTGGAATTGCCACAATGAGCAAGTGGGAATATAGGAAGGAACTACCCTTACCGGCAGCTGAGGATGGAATGAC
TATGAAGAAGAAGCTCAAGTGCCACGCAAAGAAGCTCCGGAAGCTCCTCACCAAGCACACATTGATGGGAGTAGTGCCGC
TCGTCTGGGCAAAGCTGGAGCCGATGCCAATGATCACGTCATCCGGGAGAACCATCAAGTCGAACGCGAGATTCACGGGT
CCTGAGTGGACCGCGTGAAACTGGGTGTACTAGTAGTAGTAGGATCTATTCTCCTATCGTTTGTTCCCCACATGTTCCTA
AAACTTTAGTTAGGTTGGGTGGAAATACATTGCCAGTGTCATGTGCTGAACTGAAATTCACAGCACCAGGTGATAACACA
ACAGTATCATCATCTGAGTCACCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40907.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis