Browse Element(s) Details


Os.32877.1.S1_x_at

Description gb:AK102543.1
DB_XREF= gi:32987752
TID=Os.32877.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0066C06.21 (OSJNBa0066C06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096M08, full insert sequence.
FL= gb:AK102543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3726011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37210Os.40907.2.S1_at11/111+21110362..21113499expressed protein
LOC_Os01g37220NANA1+21118120..21118347hypothetical protein
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37270OsAffx.23540.1.S1_at11/111+21140502..21140942hypothetical protein
LOC_Os01g37280Os.14362.1.S1_at11/111+21143832..21147293expressed protein
LOC_Os01g37280Os.27900.1.A1_x_at1/111+21143832..21147293expressed protein
LOC_Os01g37300NANA1+21150232..21150944retrotransposon, putative, centromere-specific
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32877.1.S1_x_at--282--6191Chr01:21134737..21134943 (25 bp)
GAGGACTCAGATACCTGGATTTACA
LOC_Os01g37260
Os.32877.1.S1_x_at--474--2591Chr01:21135022..21135046 (25 bp)
AACGCAGTTCTGCAGCTAGCATATC
LOC_Os01g37260
Os.32877.1.S1_x_at--1072--4951Chr01:21135040..21135064 (25 bp)
GCATATCTTTTGGAAGCTGCTCCTT
LOC_Os01g37260
Os.32877.1.S1_x_at--612--2691Chr01:21135053..21135077 (25 bp)
AAGCTGCTCCTTTGTTAGTGGACCT
LOC_Os01g37260
Os.32877.1.S1_x_at--622--7451Chr01:21136637..21136661 (25 bp)
GTGTGCAGATATTTGTGAGGACCCC
LOC_Os01g37260
Os.32877.1.S1_x_at--769--7631Chr01:21136669..21136693 (25 bp)
GGGACGTGATTATACATCGCCCCTA
LOC_Os01g37260
Os.32877.1.S1_x_at--546--4531Chr01:21136687..21136711 (25 bp)
GCCCCTACTACAATCTCAAGAGAGC
LOC_Os01g37260
Os.32877.1.S1_x_at--306--9731Chr01:21136702..21136726 (25 bp)
TCAAGAGAGCTTGCATGACCGGATT
LOC_Os01g37260
Os.32877.1.S1_x_at--413--71Chr01:21136746..21136770 (25 bp)
ATTGCCCTAGTAAGATTTATCCTCA
LOC_Os01g37260
Os.32877.1.S1_x_at--248--1091Chr01:21136950..21136974 (25 bp)
AGGGCTGGACTTACATGCCCTTGTA
LOC_Os01g37260
Os.32877.1.S1_x_at--681--2091Chr01:21136962..21136986 (25 bp)
ACATGCCCTTGTACTTTTTCAGAAA
LOC_Os01g37260
Target Sequence 
GAGGACTCAGATACCTGGATTTACACAGCCCCCTCTTAAATTTATCAATTTAAGGCATCTGATCATGAGGATAACCTTTG
GAAGTGCTAAACGTTTTGGAAAAAACGCAGTTCTGCAGCTAGCATATCTTTTGGAAGCTGCTCCTTTGTTAGTGGACCTT
CATTTGGATATGACGTGTGCAGATATTTGTGAGGACCCCCCTGCTAGGGACGTGATTATACATCGCCCCTACTACAATCT
CAAGAGAGCTTGCATGACCGGATTTAATGGTAATGGAGGTCAAATTGCCCTAGTAAGATTTATCCTCAGGAATGCAGTAA
AATTGGAGAAAATGACTATAGTTCCAAAAGGGAGAAGAACGGGCAAAATGATGGGAGAATACGAATTAAGCCTTAGAATG
ATCAGAAAAAAAATTGTTCCAAAAGACAAGAACGGTGTACTCGTAATTTTGTAGTAATTCTCAAGTTATGTATGTACTAT
TATAGGAAGGGCTGGACTTACATGCCCTTGTACTTTTTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32877.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis