Browse Element(s) Details


OsAffx.23540.1.S1_at

Description tigr:9629.m03527
TID=OsAffx.23540.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3727011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37220NANA1+21118120..21118347hypothetical protein
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37270OsAffx.23540.1.S1_at11/111+21140502..21140942hypothetical protein
LOC_Os01g37280Os.14362.1.S1_at11/111+21143832..21147293expressed protein
LOC_Os01g37280Os.27900.1.A1_x_at1/111+21143832..21147293expressed protein
LOC_Os01g37300NANA1+21150232..21150944retrotransposon, putative, centromere-specific
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23540.1.S1_at--34--1371Chr01:21140850..21140874 (25 bp)
AGAGCACCTGGAGTCAATCCGAGAT
LOC_Os01g37270
OsAffx.23540.1.S1_at--60--3051Chr01:21140835..21140859 (25 bp)
AATCCGAGATGCTCTCCGCAAGAAC
LOC_Os01g37270
OsAffx.23540.1.S1_at--779--8071Chr01:21140784..21140808 (25 bp)
GGAGCTTGGCGCTAAGGTCACGATC
LOC_Os01g37270
OsAffx.23540.1.S1_at--1094--1871Chr01:21140765..21140789 (25 bp)
ACGATCCCTCCGCATGGCGATGAGA
LOC_Os01g37270
OsAffx.23540.1.S1_at--874--691Chr01:21140746..21140770 (25 bp)
ATGAGACCATGCTGGTGTCCTCCTT
LOC_Os01g37270
OsAffx.23540.1.S1_at--757--7411Chr01:21140732..21140756 (25 bp)
GTGTCCTCCTTGTGCGACCTGGTCA
LOC_Os01g37270
OsAffx.23540.1.S1_at--385--8071Chr01:21140700..21140724 (25 bp)
GGAGAAGATCCCTGGCAAGCATGTT
LOC_Os01g37270
OsAffx.23540.1.S1_at--871--1911Chr01:21140639..21140663 (25 bp)
ACGGGCGCATGTCACGTTCTCGCGT
LOC_Os01g37270
OsAffx.23540.1.S1_at--557--1891Chr01:21140626..21140650 (25 bp)
ACGTTCTCGCGTGTGTCAGGCTCGC
LOC_Os01g37270
OsAffx.23540.1.S1_at--870--5831Chr01:21140588..21140612 (25 bp)
GACCTCAATGAGGTGTTGACCAGGG
LOC_Os01g37270
OsAffx.23540.1.S1_at--257--2091Chr01:21140539..21140563 (25 bp)
ACATGATGTCGGAGGTCGCAGAGCT
LOC_Os01g37270
Target Sequence 
AGAGCACCTGGAGTCAATCCGAGATGCTCTCCGCAAGAACTACACCAGCCTTCACCAGCTCGTGGAGGAGCTTGGCGCTA
AGGTCACGATCCCTCCGCATGGCGATGAGACCATGCTGGTGTCCTCCTTGTGCGACCTGGTCAAGGAGATGGAGAAGATC
CCTGGCAAGCATGTTGCCAAGGTCGCCGAGAACACCTGCACCGGCCTGCGCACGGGCGCATGTCACGTTCTCGCGTGTGT
CAGGCTCGCGCACCCCGAGATCGACCTCAATGAGGTGTTGACCAGGGGCGGGGCTGTCGACACGCGCGAGGACATGATGT
CGGAGGTCGCAGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis