Browse Element(s) Details


Os.32877.1.S1_at

Description gb:AK102543.1
DB_XREF= gi:32987752
TID=Os.32877.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0066C06.21 (OSJNBa0066C06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096M08, full insert sequence.
FL= gb:AK102543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3726010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37210Os.40907.2.S1_at11/111+21110362..21113499expressed protein
LOC_Os01g37220NANA1+21118120..21118347hypothetical protein
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37270OsAffx.23540.1.S1_at11/111+21140502..21140942hypothetical protein
LOC_Os01g37280Os.14362.1.S1_at11/111+21143832..21147293expressed protein
LOC_Os01g37280Os.27900.1.A1_x_at1/111+21143832..21147293expressed protein
LOC_Os01g37300NANA1+21150232..21150944retrotransposon, putative, centromere-specific
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32877.1.S1_at--23--9611NONE
TCATTTGGATATGACGTGTGCAGAT
NONE
Os.32877.1.S1_at--982--3751Chr01:21136902..21136926 (25 bp)
CTCGTAATTTTGTAGTAATTCTCAA
LOC_Os01g37260
Os.32877.1.S1_at--765--7071Chr01:21136916..21136940 (25 bp)
GTAATTCTCAAGTTATGTATGTACT
LOC_Os01g37260
Os.32877.1.S1_at--437--6991Chr01:21136936..21136960 (25 bp)
GTACTATTATAGGAAGGGCTGGACT
LOC_Os01g37260
Os.32877.1.S1_at--683--9851Chr01:21136943..21136967 (25 bp)
TATAGGAAGGGCTGGACTTACATGC
LOC_Os01g37260
Os.32877.1.S1_at--249--1091Chr01:21136950..21136974 (25 bp)
AGGGCTGGACTTACATGCCCTTGTA
LOC_Os01g37260
Os.32877.1.S1_at--856--3891Chr01:21136954..21136978 (25 bp)
CTGGACTTACATGCCCTTGTACTTT
LOC_Os01g37260
Os.32877.1.S1_at--561--2051Chr01:21136958..21136982 (25 bp)
ACTTACATGCCCTTGTACTTTTTCA
LOC_Os01g37260
Os.32877.1.S1_at--682--2091Chr01:21136962..21136986 (25 bp)
ACATGCCCTTGTACTTTTTCAGAAA
LOC_Os01g37260
Os.32877.1.S1_at--1129--4531Chr01:21136966..21136990 (25 bp)
GCCCTTGTACTTTTTCAGAAACAAT
LOC_Os01g37260
Os.32877.1.S1_at--379--5531Chr01:21136983..21137007 (25 bp)
GAAACAATAATAATAGTGCATCTTT
LOC_Os01g37260
Target Sequence 
TCATTTGGATATGACGTGTGCAGATATTTGTGAGGACCCCCCTGCTAGGGACGTGATTATACATCGCCCCTACTACAATC
TCAAGAGAGCTTGCATGACCGGATTTAATGGTAATGGAGGTCAAATTGCCCTAGTAAGATTTATCCTCAGGAATGCAGTA
AAATTGGAGAAAATGACTATAGTTCCAAAAGGGAGAAGAACGGGCAAAATGATGGGAGAATACGAATTAAGCCTTAGAAT
GATCAGAAAAAAAATTGTTCCAAAAGACAAGAACGGTGTACTCGTAATTTTGTAGTAATTCTCAAGTTATGTATGTACTA
TTATAGGAAGGGCTGGACTTACATGCCCTTGTACTTTTTCAGAAACAATAATAATAGTGCATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis