Browse Element(s) Details


Os.27900.1.A1_x_at

Description gb:AK060432.1
DB_XREF= gi:32970450
TID=Os.27900.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B03, full insert sequence.
FL= gb:AK060432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g372801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37230NANA1+21121129..21124054retrotransposon protein, putative, unclassified
LOC_Os01g37240NANA1+21124384..21127482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37250NANA1+21127873..21130501retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37270OsAffx.23540.1.S1_at11/111+21140502..21140942hypothetical protein
LOC_Os01g37280Os.14362.1.S1_at11/111+21143832..21147293expressed protein
LOC_Os01g37280Os.27900.1.A1_x_at1/111+21143832..21147293expressed protein
LOC_Os01g37300NANA1+21150232..21150944retrotransposon, putative, centromere-specific
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27900.1.A1_x_at--470--733Chr12:795016..795040 (25 bp)
ATGTTGATGAGCCAATCCTGCTGCT
NONE
Os.27900.1.A1_x_at--667--9112Chr12:794998..795022 (25 bp)
TGCTGCTCCAATTGACAGCTTCAAG
NONE
Os.27900.1.A1_x_at--561--2492Chr12:794910..794934 (25 bp)
AACAGTGATCTCTACATGCTAGGCA
NONE
Os.27900.1.A1_x_at--229--4872Chr12:794893..794917 (25 bp)
GCTAGGCACTTTCTATTTTATTGGC
NONE
Os.27900.1.A1_x_at--204--5632Chr12:794828..794852 (25 bp)
GAGACTTCTCGTTGAAACCACCTAT
NONE
Os.27900.1.A1_x_at--1118--3492Chr12:794752..794776 (25 bp)
CATGGCACAGGACTAGCAGCAGCGT
NONE
Os.27900.1.A1_x_at--1056--8932Chr12:794716..794740 (25 bp)
TGACTGAGTCTGGTGCCGGCCATAT
NONE
Os.27900.1.A1_x_at--118--4493Chr01:21147113..21147137 (25 bp)
GCCGGCCATATCCATCATTGTTGGT
LOC_Os01g37280
Os.27900.1.A1_x_at--566--10712Chr12:794628..794652 (25 bp)
TTGCGTGTGTGATCAGACAGCCGTT
NONE
Os.27900.1.A1_x_at--80--2411Chr12:794585..794609 (25 bp)
AAACATTTGCCGGATGTGCATAAAT
NONE
Os.27900.1.A1_x_at--350--7331Chr12:794570..794594 (25 bp)
GTGCATAAATGTTTTACTCCTGTAG
NONE
Target Sequence 
ATGTTGATGAGCCAATCCTGCTGCTCCAATTGACAGCTTCAAGGGGTACATCAAGAAGAGGATTTTTATTAAAATGTGCT
AATTTTTTGATGTNNTGAAAGTGACTAACAGTGATCTCTACATGCTAGGCACTTTCTATTTTATTGGCTTNTAATCTGTG
TCATTTAGAGTCATACTGAATGTAAATCGAGACTTCTCGTTGAAACCACCTATTGGAGACACTGGNAAGGANACACGAGC
AGGGCCATAAAGATTATTATGCGGCATGGCACAGGACTAGCAGCAGCGTCGGCANGGAGGTGACTGAGTCTGGTGCCGGC
CATATCCATCATTGTTGGTGGTGTTGTAATTTTTTATTTGTTTTTGTGCATTCTACAAATGTATCACATTGCGTGTGTGA
TCAGACAGCCGTTGTAATTNTAAATCCGTTCAAACATTTGCCGGATGTGCATAAATGTTTTACTCCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27900.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis