Browse Element(s) Details


OsAffx.25860.5.S1_at

Description tigr:9629.m03532
TID=OsAffx.25860.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3732010/11hypothetical protein
LOC_Os03g124804/11hypothetical protein
LOC_Os06g424104/11hypothetical protein
LOC_Os05g394904/11hypothetical protein
LOC_Os04g044103/11hypothetical protein
LOC_Os06g425302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37260Os.32877.1.S1_x_at11/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.1.S1_at10/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37260Os.32877.2.S1_at7/111+21132652..21137009F-box domain containing protein, expressed
LOC_Os01g37270OsAffx.23540.1.S1_at11/111+21140502..21140942hypothetical protein
LOC_Os01g37280Os.14362.1.S1_at11/111+21143832..21147293expressed protein
LOC_Os01g37280Os.27900.1.A1_x_at1/111+21143832..21147293expressed protein
LOC_Os01g37300NANA1+21150232..21150944retrotransposon, putative, centromere-specific
LOC_Os01g37310OsAffx.25860.2.S1_x_at11/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310OsAffx.25860.1.S1_x_at7/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37310Os.12304.1.S1_at4/111+21153618..21155759SWIM zinc finger family protein
LOC_Os01g37320OsAffx.25860.5.S1_at10/111+21157114..21161911hypothetical protein
LOC_Os01g37320Os.12304.1.S1_at3/111+21157114..21161911hypothetical protein
LOC_Os01g37340OsAffx.8279.1.S1_at1/111+21173458..21175065retrotransposon protein, putative, unclassified
LOC_Os01g37340OsAffx.7789.1.S1_x_at1/111+21173458..21175065retrotransposon protein, putative, unclassified
LOC_Os01g37340Os.45161.1.A1_x_at1/111+21173458..21175065retrotransposon protein, putative, unclassified
LOC_Os01g37350Os.52731.1.S1_at11/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37350Os.10255.1.S1_s_at11/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37350Os.38269.1.S1_x_at4/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37350OsAffx.22699.1.S1_x_at1/111+21176596..21184072retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37360Os.27066.1.A1_x_at11/111+21184201..21187401hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25860.5.S1_at--218--3251Chr01:21158815..21158839 (25 bp)
GAATCCTTTCCCCACGTATGGAAAG
LOC_Os01g37320
OsAffx.25860.5.S1_at--584--5371NONE
GAAGAAACTTCCGACTATTGACATA
NONE
OsAffx.25860.5.S1_at--1120--3571Chr01:21158712..21158736 (25 bp)
CATATTTTTTGGGTTTCAGCTGCGA
LOC_Os01g37320
OsAffx.25860.5.S1_at--596--10535Chr06:25489480..25489504 (25 bp)
TTCAGCTGCGAAACAAACATGATGA
LOC_Os06g42410
OsAffx.25860.5.S1_at--486--6211Chr01:21157689..21157712 (24 bp)
GAGGCTATTTGGCTGGACACTCAAA
LOC_Os01g37320
OsAffx.25860.5.S1_at--208--2991Chr01:21157647..21157671 (25 bp)
AATGTTCCAGATCAAGTATTAGCAG
LOC_Os01g37320
OsAffx.25860.5.S1_at--391--10455Chr06:25490554..25490578 (25 bp)
TTAGCAGCGGATGAGATACAGAGAT
LOC_Os06g42410
OsAffx.25860.5.S1_at--547--8175Chr06:25490584..25490608 (25 bp)
GGAACTGATTTTGTAGGCTGGAGAC
LOC_Os06g42410
OsAffx.25860.5.S1_at--792--1611Chr01:21157466..21157490 (25 bp)
AGCTGGTGATGACCACTGGAACCCA
LOC_Os01g37320
OsAffx.25860.5.S1_at--668--3131Chr01:21157220..21157244 (25 bp)
AATTATACATTCTTGACCCACTGAG
LOC_Os01g37320
OsAffx.25860.5.S1_at--678--2456Chr06:25491036..25491060 (25 bp)
AAAATTTCACATTTCATCTGCTCTG
LOC_Os06g42410
Target Sequence 
GAATCCTTTCCCCACGTATGGAAAGATGAAGAAACTTCCGACTATTGACATATTTTTTGGGTTTCAGCTGCGAAACAAAC
ATGATGAAAAATACAATCTTGGCCATCATACGGGTGCAACAGAGGCTATTTGGCTGGACACTCAAATGCAAGAAGAAATA
TTCAATGTTCCAGATCAAGTATTAGCAGCGGATGAGATACAGAGATTTGGAGGAACTGATTTTGTAGGCTGGAGACATTT
CTTAAATCAAGATTTTGCAATGTTTGCAACAGCTGGTGATGACCACTGGAACCCAGAGGATCATCTCCCCTCATTCAAAG
ATGACTCCCTGATACCATATGACGTACCTAGTTGCCACCTGATATTTATTCCACTACTTCAACCACTGCACTATTCTCTA
TACGCATTTGATATGGAGAAAACAAAATTATACATTCTTGACCCACTGAGAGACGCCTCGAAAAGATCAGAGGATACAGC
AGAAAGACACTTAAAAACAAAATTTCACATTTCATCTGCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25860.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis