Browse Element(s) Details


Os.38269.1.S1_x_at

Description gb:AK063510.1
DB_XREF= gi:32973528
TID=Os.38269.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F11, full insert sequence.
FL= gb:AK063510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0237910/11Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os01g373504/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g038502/11F-box domain containing protein, expressed
LOC_Os12g085641/11expressed protein
LOC_Os04g093501/11expressed protein
LOC_Os08g396941/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02320Os.21252.1.S1_at11/1111+662978..670704nucleotidyltransferase family protein, putative, expressed
LOC_Os11g02310OsAffx.23315.1.S1_s_at2/1111+670598..672211pentatricopeptide, putative
LOC_Os11g02330Os.37860.1.S1_at11/1111+679037..679892expressed protein
LOC_Os11g02330Os.57455.1.S1_x_at6/1111+679037..679892expressed protein
LOC_Os11g02340OsAffx.29227.2.S1_at10/1111+681453..683177hypothetical protein
LOC_Os11g02340OsAffx.29227.1.S1_s_at1/1111+681453..683177hypothetical protein
LOC_Os11g02350Os.4380.1.S1_at11/1111+683780..684610Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g02360OsAffx.6966.1.S1_at11/1111+685087..686482hypothetical protein
LOC_Os11g02379Os.10615.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10255.1.S1_s_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.1.S1_at11/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.38269.1.S1_x_at10/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.27520.2.S1_x_at9/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.10615.1.S1_x_at3/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02379Os.51910.1.S1_x_at1/1111+692274..702933Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os11g02400Os.26565.1.S1_a_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02400Os.36779.1.S1_s_at11/1111+714405..715481Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os11g02410OsAffx.6967.1.S1_at11/1111+719750..720923hypothetical protein
LOC_Os11g02410OsAffx.31617.1.S1_x_at1/1111+719750..720923hypothetical protein
LOC_Os11g02424Os.10120.1.S2_a_at11/1111+721936..725972expressed protein
LOC_Os11g02424Os.10120.2.S1_at11/1111+721936..725972expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009809biological_processlignin biosynthesis
GO:0005618cellular_componentcell wall
GO:0005792cellular_componentmicrosome
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004497molecular_functionmonooxygenase activity
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38269.1.S1_x_at--572--41914Chr12:4339532..4339557 (25 bp)
CCCTGCATAGTGGTTTTCTTGATGT
LOC_Os12g08564
Os.38269.1.S1_x_at--837--8092Chr11:699658..699682 (25 bp)
GGACTGCCATATGTAAACCTAAACT
LOC_Os11g02379
Os.38269.1.S1_x_at--471--7452Chr11:699702..699726 (25 bp)
GTGTGAGTCTTCCTTTCCCGGGAGC
LOC_Os11g02379
Os.38269.1.S1_x_at--24--2555Chr11:699732..699756 (25 bp)
AACTCCTCTCACTGTTAGAAACCTT
LOC_Os11g02379
Os.38269.1.S1_x_at--1127--6772Chr11:699745..699769 (25 bp)
GTTAGAAACCTTGGACGCCTAGAGT
LOC_Os11g02379
Os.38269.1.S1_x_at--86--3997Chr12:8401215..8401239 (25 bp)
CGGGTACTGCCAAAGTGAGGTTGTT
NONE
Os.38269.1.S1_x_at--279--6652Chr11:699813..699837 (25 bp)
GTTGTTGAAAGGCTTTGCCATGGCA
LOC_Os11g02379
Os.38269.1.S1_x_at--436--10293Chr11:699826..699850 (25 bp)
TTTGCCATGGCAAGTCTCATTCGTT
LOC_Os11g02379
Os.38269.1.S1_x_at--804--3752Chr11:699841..699865 (25 bp)
CTCATTCGTTGGGACTTAGGCTCAT
LOC_Os11g02379
Os.38269.1.S1_x_at--598--1391NONE
AGACTCTAAATTCTTGAACTGGTTA
NONE
Os.38269.1.S1_x_at--264--9591Chr11:700003..700022 (20 bp)
TCTTGAACTGGTTAGGTGGGATGTT
LOC_Os11g02379
Target Sequence 
CCCTGCATAGTGGTTTTCTTGATGTGTGTGAGGNAGGGCNTACGGTGGGGCAGCCATTGGTAGGACNNCGAGGGGCNGGT
GCCTACAGTGGTGTCGNCATCGGTAGGACTGCCATATGTAAACCTAAACTTAACTATAACTTNATGCNTGTGTGAGTCTT
CCTTTCCCGGGAGCGCCAGAACTCCTCTCACTGTTAGAAACCTTGGACGCCTAGAGTGCATGAGGACTAAAGTTCATGGA
GCGGGTACTGCCAAAGTGAGGTTGTTGAAAGGCTTTGCCATGGCAAGTCTCATTCGTTGGGACTTAGGCTCATGTGTTGG
GCAAGTCGCGGAGTACGGGTAAAGTGTACATCCACTGCAGTGTGAGTAAACTAAATCTATTCGAATAGCCGTGCTCGCGG
TTATTGAGCACCGAGACGTGTATTACACTTGGCTAGACTCTAAATTCTTGAACTGGTTAGGTGGGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38269.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis