Browse Element(s) Details


Os.4380.1.S1_at

Description gb:AK119692.1
DB_XREF= gi:37989315
TID=Os.4380.1
CNT=80
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.4380 (NCBI UniGene Cluster)
UG_TITLE=Lipid transfer protein precursor, mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-B12, full insert sequence.
FL= gb:AK119681.1 gb:AK104005.1 gb:AK119677.1 gb:AK060340.1 gb:AK072917.1 gb:AK119692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0230011/11Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os11g0235011/11Nonspecific lipid-transfer protein 4 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02250Os.28385.3.S1_x_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.3.S1_at10/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250OsAffx.25784.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02250Os.28385.1.S1_x_at1/1112+697942..704154mitogen-activated protein kinase, putative, expressed
LOC_Os12g02260Os.21252.1.S1_at7/1112+706649..712432nucleotidyltransferase family protein, putative, expressed
LOC_Os12g02270NANA12+715285..716766hypothetical protein
LOC_Os12g02280Os.53038.1.S1_at11/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02280OsAffx.23315.1.S1_s_at3/1112+717524..721185pentatricopeptide, putative, expressed
LOC_Os12g02290Os.28462.1.S1_s_at11/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02290Os.57455.1.S1_x_at1/1112+722133..723250Nonspecific lipid-transfer protein 5 precursor, putative, expressed
LOC_Os12g02300Os.4380.1.S1_at11/1112+726802..727637Nonspecific lipid-transfer protein 4 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_x_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02310Os.10615.1.S1_s_at11/1112+732190..733084Nonspecific lipid-transfer protein 2 precursor, putative, expressed
LOC_Os12g02320Os.8629.1.S1_x_at9/1112+736313..737282Nonspecific lipid-transfer protein 1 precursor, putative, expressed
LOC_Os12g02330Os.36779.1.S1_s_at11/1112+745162..746120Nonspecific lipid-transfer protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4380.1.S1_at--89--8372Chr12:726894..726918 (25 bp)
GGCGGGTGCTCGCAGGACGATGGCG
LOC_Os12g02300
Os.4380.1.S1_at--1043--8092Chr12:726908..726932 (25 bp)
GGACGATGGCGCTGGTTGCGTTGGT
LOC_Os12g02300
Os.4380.1.S1_at--1081--2732Chr12:727135..727159 (25 bp)
AAGAACATGGCCTCCTCCTTCAGGA
LOC_Os12g02300
Os.4380.1.S1_at--363--9252Chr12:727150..727174 (25 bp)
TCCTTCAGGAACCTCAACATGGGCA
LOC_Os12g02300
Os.4380.1.S1_at--237--7232Chr12:727234..727348 (25 bp)
GTCGACTGCTCCAAGATCAACTAAT
LOC_Os12g02300
Os.4380.1.S1_at--515--9092Chr12:727240..727354 (25 bp)
TGCTCCAAGATCAACTAATTACTAG
LOC_Os12g02300
Os.4380.1.S1_at--384--9752Chr12:727345..727369 (25 bp)
TAATTACTAGCTTGATCATCTCCAG
LOC_Os12g02300
Os.4380.1.S1_at--449--2032Chr12:727350..727374 (25 bp)
ACTAGCTTGATCATCTCCAGCTGAG
LOC_Os12g02300
Os.4380.1.S1_at--589--3593Chr12:727355..727379 (25 bp)
CTTGATCATCTCCAGCTGAGATCGA
LOC_Os12g02300
Os.4380.1.S1_at--1100--4732Chr12:727369..727393 (25 bp)
GCTGAGATCGATATGTATGGGAAGA
LOC_Os12g02300
Os.4380.1.S1_at--888--8632Chr12:727386..727410 (25 bp)
TGGGAAGATCTAGAGAGTGACTGTT
LOC_Os12g02300
Target Sequence 
GGCGGGTGCTCGCAGGACGATGGCGCTGGTTGCGTTGGTGGCGGTGGTGGCGGCGGCGGTGGTGGCGGAGAGGGCGTCGG
CGGCGGTGAGCTGCGGCGACGTGACGTCGTCGATCGCGCCGTGCCTGTCGTACGTNATGGGGAGGGAGAGCTCGCCGTCG
TCGTCGTGCTGCAGCGGGGTGAGGACCCTCAACGGCAAGGCCTCNTCCGTCNGCCGACCGCCGCACCGCCTGCAGCTGCC
TCAAGAACATGGCCTCCTCCTTCAGGAACCTCAACATGGGCAACGCCGCCTCCATCCCCAGCAAATGNGGCGTCTCCGTC
GCCTTCCCCATCAGCACCTCCGTCGACTGCTCCAAGATCAACTAATTACTAGCTTGATCATCTCCAGCTGAGATCGATAT
GTATGGGAAGATCTAGAGAGTGACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis