Browse Element(s) Details


OsAffx.23315.1.S1_s_at

Description gb:NM_183706.1
DB_XREF= gi:34894539
GEN=B1011A07.18
TID=OsAffx.23315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1011A07.18 (B1011A07.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2105011/11hypothetical protein
LOC_Os12g022803/11pentatricopeptide, putative, expressed
LOC_Os11g023102/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21050OsAffx.23315.1.S1_s_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21050OsAffx.23315.2.S1_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23315.1.S1_s_at--682--10631Chr01:11735603..11735627 (25 bp)
TTCCCTGCGCTACTCAAATCTTGCG
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--214--6631Chr01:11735541..11735565 (25 bp)
GTTGGTCTTCATCTCCAATGGGATG
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--39--8011Chr01:11735521..11735545 (25 bp)
GGATGGAGCTGCATTGCCTTGTCTT
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--1045--1591Chr01:11735515..11735539 (25 bp)
AGCTGCATTGCCTTGTCTTGATGAT
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--1037--10811Chr01:11735503..11735527 (25 bp)
TTGTCTTGATGATTGGCTGCGGGAA
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--635--7972Chr12:717958..717981 (24 bp)
GGATCGCTATGTGCGGAATGCGCTT
LOC_Os12g02280
OsAffx.23315.1.S1_s_at--64--753Chr12:717989..718013 (25 bp)
ATGTATGGCAAGTTCGGTCGCCTCG
LOC_Os12g02280
OsAffx.23315.1.S1_s_at--629--5073Chr12:718019..718043 (25 bp)
GCACGGAAGGCGTTCGATGAAATGC
LOC_Os12g02280
OsAffx.23315.1.S1_s_at--854--6311Chr01:11735402..11735426 (25 bp)
GATGAAATGCCTGCCAAGAATGCCG
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--783--2731Chr01:11735387..11735411 (25 bp)
AAGAATGCCGTCTCGTGGAACGCAT
LOC_Os01g21050
OsAffx.23315.1.S1_s_at--923--4491Chr01:11735381..11735405 (25 bp)
GCCGTCTCGTGGAACGCATTGGTCG
LOC_Os01g21050
Target Sequence 
TTCCCTGCGCTACTCAAATCTTGCGCCCGCGCATTCAACCAGAGCTCTCGCGCCAGCGCCGCGTTGGTCTTCATCTCCAA
TGGGATGGAGCTGCATTGCCTTGTCTTGATGATTGGCTGCGGGAAGGATCGCTATGTGCGGAATGCGCTTGTTTCCATGT
ATGGCAAGTTCGGTCGCCTCGGGGATGCACGGAAGGCGTTCGATGAAATGCCTGCCAAGAATGCCGTCTCGTGGAACGCA
TTGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23315.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis