Browse Element(s) Details


Os.32108.1.S1_s_at

Description gb:AK105998.1
DB_XREF= gi:32991207
TID=Os.32108.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectinesterase 2.1 precursor (B1011A07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-H08, full insert sequence.
FL= gb:AK105998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2103411/11Pectinesterase-2 precursor, putative, expressed
LOC_Os07g106901/11NLI interacting factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21050OsAffx.23315.1.S1_s_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21050OsAffx.23315.2.S1_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005576cellular_componentextracellular region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32108.1.S1_s_at--1154--1771Chr01:11732951..11732975 (25 bp)
ACCGTCGGGCTGTGACACTGTGATA
LOC_Os01g21034
Os.32108.1.S1_s_at--814--3331Chr01:11732966..11732990 (25 bp)
CACTGTGATAGAGCGCGCTGGGTTC
LOC_Os01g21034
Os.32108.1.S1_s_at--731--8631Chr01:11732984..11733008 (25 bp)
TGGGTTCAGGGCGTCACGGCAATAA
LOC_Os01g21034
Os.32108.1.S1_s_at--776--1931Chr01:11732999..11733023 (25 bp)
ACGGCAATAAGCGTGCTGTGCTGAC
LOC_Os01g21034
Os.32108.1.S1_s_at--1098--4651Chr01:11733009..11733033 (25 bp)
GCGTGCTGTGCTGACAAGTGAAGAA
LOC_Os01g21034
Os.32108.1.S1_s_at--1060--6651Chr01:11733047..11733071 (25 bp)
GTTCGAATCGAATACCATGTTGCTG
LOC_Os01g21034
Os.32108.1.S1_s_at--384--312Chr07:5807049..5807077 (23 bp)
ATACCATGTTGCTGTTGATTCTTTT
LOC_Os07g10690
Os.32108.1.S1_s_at--376--9551Chr01:11733077..11733101 (25 bp)
TCTTTTGTTTTTGGGCCGAAATGTG
LOC_Os01g21034
Os.32108.1.S1_s_at--172--7451Chr01:11733099..11733123 (25 bp)
GTGTAACATGTACCTATACGTGATT
LOC_Os01g21034
Os.32108.1.S1_s_at--223--9931Chr01:11733115..11733139 (25 bp)
TACGTGATTCAGAAATTACCATTCG
LOC_Os01g21034
Os.32108.1.S1_s_at--257--11Chr01:11733129..11733153 (25 bp)
ATTACCATTCGATACGGGTCCGTAT
LOC_Os01g21034
Target Sequence 
ACCGTCGGGCTGTGACACTGTGATAGAGCGCGCTGGGTTCAGGGCGTCACGGCAATAAGCGTGCTGTGCTGACAAGTGAA
GAAAGAGGGGGCACCAGTTCGAATCGAATACCATGTTGCTGTTGATTCTTTTGTTTTTGGGCCGAAATGTGTAACATGTA
CCTATACGTGATTCAGAAATTACCATTCGATACGGGTCCGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32108.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis