Browse Element(s) Details


Os.37598.2.S1_at

Description gb:AK110846.1
DB_XREF= gi:32996055
TID=Os.37598.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectinesterase (B1011A07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B12, full insert sequence.
FL= gb:AK110846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2098011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042545biological_processcell wall modification
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37598.2.S1_at--991--1991Chr01:11699149..11699173 (25 bp)
ACTCCGCCACGTTCGGTGAGTTAAT
LOC_Os01g20980
Os.37598.2.S1_at--356--9731Chr01:11699085..11699109 (25 bp)
TAAGTTGGTACATGTCGGTGTTCGG
LOC_Os01g20980
Os.37598.2.S1_at--849--3691Chr01:11699058..11699082 (25 bp)
CTAGGGTTTTAATTCCATACTGCAA
LOC_Os01g20980
Os.37598.2.S1_at--214--9011Chr01:11699038..11699062 (25 bp)
TGCAATTTGGCCAGCTGGTTCGATA
LOC_Os01g20980
Os.37598.2.S1_at--355--4671Chr01:11698959..11698983 (25 bp)
GCGGGTCGCAAGTCAAAAGTGTGTT
LOC_Os01g20980
Os.37598.2.S1_at--547--7471Chr01:11698941..11698965 (25 bp)
GTGTGTTGACACTTTACATCAGTGC
LOC_Os01g20980
Os.37598.2.S1_at--1033--9871Chr01:11698927..11698951 (25 bp)
TACATCAGTGCAAACGTACCTCACC
LOC_Os01g20980
Os.37598.2.S1_at--885--4531Chr01:11698896..11698920 (25 bp)
GCCCGGCCGGAATACGATCATTGAC
LOC_Os01g20980
Os.37598.2.S1_at--817--10731Chr01:11698876..11698900 (25 bp)
TTGACGAGGCATCCCATGAGTTATT
LOC_Os01g20980
Os.37598.2.S1_at--244--2451Chr01:11698851..11698875 (25 bp)
AAAATCCTTAGCTGTTAGGCTCATA
LOC_Os01g20980
Os.37598.2.S1_at--969--4951Chr01:11698824..11698848 (25 bp)
GCATAGTAGATGTTTCTGAATCCTA
LOC_Os01g20980
Target Sequence 
ACTCCGCCACGTTCGGTGAGTTAATTTGTCAACGCAATTTCTTCTCGTAGAAGTTTTAGGTAATTAAGTTGGTACATGTC
GGTGTTCGGTACTAGGGTTTTAATTCCATACTGCAATTTGGCCAGCTGGTTCGATAATTAATGAAGTGGGAACTAGGAGC
AAGTAGAGTAGTGTAGCGGTAGATTAATAAGCGGGTCGCAAGTCAAAAGTGTGTTGACACTTTACATCAGTGCAAACGTA
CCTCACCCTCACCGCCCGGCCGGAATACGATCATTGACGAGGCATCCCATGAGTTATTAAAATCCTTAGCTGTTAGGCTC
ATAATGCATAGTAGATGTTTCTGAATCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37598.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis