Browse Element(s) Details


OsAffx.29410.1.S1_at

Description tigr:9636.m02875
TID=OsAffx.29410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2903011/11hypothetical protein
LOC_Os11g181209/11retrotransposon protein, putative, LINE subclass
LOC_Os04g030808/11subtilase family protein, putative
LOC_Os01g210101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29000OsAffx.19542.3.S1_x_at4/118+17616312..17621988retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29010OsAffx.29409.1.S1_at11/118+17624162..17625507expressed protein
LOC_Os08g29020Os.26928.1.S1_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.1.S3_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.1.S2_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.3.S1_x_at10/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29030OsAffx.29410.1.S1_at11/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.13325.1.S1_at2/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.29576.5.S1_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.10155.1.S1_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.10155.1.S1_x_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29040OsAffx.17220.1.S1_at11/118+17648439..17650184Protein kinase domain containing protein
LOC_Os08g29050NANA8+17660685..17661412retrotransposon protein, putative, unclassified
LOC_Os08g29060OsAffx.29419.3.S1_at1/118+17663805..17665680retrotransposon protein, putative, unclassified
LOC_Os08g29070OsAffx.20387.1.S1_x_at1/118+17665942..17667252retrotransposon protein, putative, unclassified
LOC_Os08g29080OsAffx.30486.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.29222.1.S1_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29080OsAffx.31069.1.S1_x_at1/118+17668970..17673368retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29410.1.S1_at--269--8552Chr11:10177527..10177722 (25 bp)
TGGAGGAGACCACCTTAGATTCTAG
LOC_Os11g18120
OsAffx.29410.1.S1_at--416--3191Chr08:17645105..17645129 (25 bp)
CACCTTAGATTCTAGGGATTCCCCT
LOC_Os08g29030
OsAffx.29410.1.S1_at--353--174Chr11:10179017..10179036 (20 bp)
ATTTGGTCCTCCTGAAGACTCTTCT
LOC_Os11g18120
OsAffx.29410.1.S1_at--652--5234Chr11:10179056..10179080 (25 bp)
GAATAGTGGATGTCCCGCAAGTCTC
LOC_Os11g18120
OsAffx.29410.1.S1_at--1160--7233Chr11:10179067..10179091 (25 bp)
GTCCCGCAAGTCTCTCAGTTGGAGA
LOC_Os11g18120
OsAffx.29410.1.S1_at--923--5255Chr11:10179090..10179114 (25 bp)
GAATGAAGCTTTAACGCAACCTTTC
LOC_Os11g18120
OsAffx.29410.1.S1_at--928--1534Chr11:10179096..10179120 (25 bp)
AGCTTTAACGCAACCTTTCTCTGAA
LOC_Os11g18120
OsAffx.29410.1.S1_at--621--8012Chr04:1254660..1254684 (25 bp)
GGAGGCTGTTTTTCAGATGGAGCAT
LOC_Os04g03080
OsAffx.29410.1.S1_at--574--1314Chr11:10178779..10179170 (25 bp)
AGATGGAGCATAATAAAGCACCGGG
LOC_Os11g18120
OsAffx.29410.1.S1_at--1061--2993Chr11:10179223..10179247 (25 bp)
AATGACTTGTTGGAGCTTTTTAATG
LOC_Os11g18120
OsAffx.29410.1.S1_at--65--5915Chr11:10179235..10179259 (25 bp)
GAGCTTTTTAATGATTTCCATAGGG
LOC_Os11g18120
Target Sequence 
TGGAGGAGACCACCTTAGATTCTAGGGATTCCCCTTCTAACTCCAAGAAAAAGGGGAAAAAAGGTTTATTTGGTCCTCCT
GAAGACTCTTCTCTGCAATTTGATGAGAATAGAATAGTGGATGTCCCGCAAGTCTCTCAGTTGGAGAATGAAGCTTTAAC
GCAACCTTTCTCTGAAATGGAGATTAAGGAGGCTGTTTTTCAGATGGAGCATAATAAAGCACCGGGGCCGGATGGTTTTC
CGGCAGAGTTTTACCAAGTTTTTTGGAATGTTATTAAAAATGACTTGTTGGAGCTTTTTAATGATTTCCATAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis