Browse Element(s) Details


Os.26928.1.S3_at

Description gb:AK064901.1
DB_XREF= gi:32974919
TID=Os.26928.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GlimmerM (OSJNBb0011E04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000L16, full insert sequence.
FL= gb:AK064901.1 gb:AK067174.1 gb:AK067437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2902011/11wall-associated kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28990Os.41695.15.S1_s_at11/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.2.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.3.S1_x_at10/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.5.S1_x_at9/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g28990Os.41695.4.S1_x_at1/118+17605284..17611421transposon protein, putative, Mutator sub-class
LOC_Os08g29000OsAffx.19542.3.S1_x_at4/118+17616312..17621988retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29010OsAffx.29409.1.S1_at11/118+17624162..17625507expressed protein
LOC_Os08g29020Os.26928.1.S1_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.1.S3_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.1.S2_at11/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29020Os.26928.3.S1_x_at10/118+17633184..17638068wall-associated kinase 2, putative, expressed
LOC_Os08g29030OsAffx.29410.1.S1_at11/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.13325.1.S1_at2/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.29576.5.S1_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.10155.1.S1_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29030OsAffx.10155.1.S1_x_at1/118+17641373..17647389hypothetical protein
LOC_Os08g29040OsAffx.17220.1.S1_at11/118+17648439..17650184Protein kinase domain containing protein
LOC_Os08g29050NANA8+17660685..17661412retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26928.1.S3_at--635--1731Chr08:17637478..17637502 (25 bp)
ACCATGAGGTGTCTGACCTCGTGGC
LOC_Os08g29020
Os.26928.1.S3_at--975--8711Chr08:17637487..17637511 (25 bp)
TGTCTGACCTCGTGGCGCGCGACAG
LOC_Os08g29020
Os.26928.1.S3_at--868--4611Chr08:17637607..17637631 (25 bp)
GCGAGACTCGCCATCAGAGCACCTA
LOC_Os08g29020
Os.26928.1.S3_at--695--391Chr08:17637619..17637643 (25 bp)
ATCAGAGCACCTACCTCAGTCGTCG
LOC_Os08g29020
Os.26928.1.S3_at--1015--9291Chr08:17637669..17637693 (25 bp)
TCCGCACTGGTGTATCTGGCTCAAA
LOC_Os08g29020
Os.26928.1.S3_at--215--6911Chr08:17637680..17637704 (25 bp)
GTATCTGGCTCAAATGTTCAGGCAT
LOC_Os08g29020
Os.26928.1.S3_at--847--8311Chr08:17637686..17637710 (25 bp)
GGCTCAAATGTTCAGGCATGCAGAT
LOC_Os08g29020
Os.26928.1.S3_at--1081--9611Chr08:17637697..17637721 (25 bp)
TCAGGCATGCAGATCTAAAACAAGT
LOC_Os08g29020
Os.26928.1.S3_at--846--10711Chr08:17637723..17637747 (25 bp)
TTGCTTAGGCTTTGTTTTCTCGGAA
LOC_Os08g29020
Os.26928.1.S3_at--1029--3651Chr08:17637726..17637750 (25 bp)
CTTAGGCTTTGTTTTCTCGGAATGA
LOC_Os08g29020
Os.26928.1.S3_at--539--8291Chr08:17637730..17637754 (25 bp)
GGCTTTGTTTTCTCGGAATGAGATC
LOC_Os08g29020
Target Sequence 
ACCATGAGGTGTCTGACCTCGTGGCGCGCGACAGCTGCCACCTGCTCGTCGCCCACGCCTCCTCCATGCCGCCTCCGGCC
CCCATGTCCTCGTCGTCGAGGCGTGCCACACACGACATCACGAGCAGTGGCGAGACTCGCCATCAGAGCACCTACCTCAG
TCGTCGCTGCTGCCGCCACCACCACGCGTCGTCCGCACTGGTGTATCTGGCTCAAATGTTCAGGCATGCAGATCTAAAAC
AAGTNTTGCTTAGGCTTTGTTTTCTCGGAATGAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26928.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis