Browse Element(s) Details


OsAffx.29576.5.S1_at

Description tigr:9639.m02051
TID=OsAffx.29576.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2297011/11hypothetical protein
LOC_Os03g277105/11retrotransposon protein, putative, unclassified
LOC_Os08g290301/11hypothetical protein
LOC_Os10g379601/11retrotransposon protein, putative, unclassified
LOC_Os03g053801/11hypothetical protein
LOC_Os04g030801/11subtilase family protein, putative
LOC_Os08g314501/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22930OsAffx.9652.1.S1_x_at1/1111+12700588..12705736hypothetical protein
LOC_Os11g22940OsAffx.18923.1.S1_at2/1111+12706526..12711599retrotransposon protein, putative, unclassified
LOC_Os11g22950NANA11+12713246..12714930Transposable element protein, putative, Retrotrans_gag
LOC_Os11g22960Os.54632.1.S1_at11/1111+12719808..12722106expressed protein
LOC_Os11g22970OsAffx.29576.5.S1_at11/1111+12725310..12726035hypothetical protein
LOC_Os11g22970OsAffx.13325.1.S1_at1/1111+12725310..12726035hypothetical protein
LOC_Os11g22980Os.26886.3.S1_x_at4/1111+12737424..12739275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g22989NANA11+12745311..12746255NA
LOC_Os11g23000OsAffx.7693.1.S1_x_at1/1111+12747544..12747978hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29576.5.S1_at--1016--7812Chr11:12725355..12725379 (25 bp)
GGTCAAAATCTTGTATATTGGCATG
LOC_Os11g22970
OsAffx.29576.5.S1_at--118--30711Chr11:12725361..12725385 (25 bp)
AATCTTGTATATTGGCATGAGTTGT
LOC_Os11g22970
OsAffx.29576.5.S1_at--83--3533Chr11:12725376..12725400 (25 bp)
CATGAGTTGTGTGCTTCTATTGTGC
LOC_Os11g22970
OsAffx.29576.5.S1_at--687--6059Chr11:12725379..12725403 (25 bp)
GAGTTGTGTGCTTCTATTGTGCATA
LOC_Os11g22970
OsAffx.29576.5.S1_at--476--7473Chr11:12725384..12725408 (25 bp)
GTGTGCTTCTATTGTGCATATCCAG
LOC_Os11g22970
OsAffx.29576.5.S1_at--340--4914Chr11:12725388..12725412 (25 bp)
GCTTCTATTGTGCATATCCAGTTGA
LOC_Os11g22970
OsAffx.29576.5.S1_at--721--7334Chr11:12725397..12725421 (25 bp)
GTGCATATCCAGTTGAATCGTTCTT
LOC_Os11g22970
OsAffx.29576.5.S1_at--1074--10134Chr11:12725402..12725426 (25 bp)
TATCCAGTTGAATCGTTCTTCTGAT
LOC_Os11g22970
OsAffx.29576.5.S1_at--860--6653Chr11:12725408..12725432 (25 bp)
GTTGAATCGTTCTTCTGATTGTTTT
LOC_Os11g22970
OsAffx.29576.5.S1_at--278--1311Chr11:12725433..12725457 (25 bp)
AGATGGAACTACCATAAGAACGGTA
LOC_Os11g22970
OsAffx.29576.5.S1_at--378--3711Chr11:12725441..12725465 (25 bp)
CTACCATAAGAACGGTAGGTTCTCG
LOC_Os11g22970
Target Sequence 
GGTCAAAATCTTGTATATTGGCATGAGTTGTGTGCTTCTATTGTGCATATCCAGTTGAATCGTTCTTCTGATTGTTTTAG
ATGGAACTACCATAAGAACGGTAGGTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29576.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis