Browse Element(s) Details


OsAffx.7693.1.S1_x_at

Description tigr:9640.m02373
TID=OsAffx.7693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2490011/11hypothetical protein
LOC_Os04g271801/11hypothetical protein
LOC_Os09g046501/11hypothetical protein
LOC_Os12g319901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g294301/11hypothetical protein
LOC_Os11g230001/11hypothetical protein
LOC_Os03g449741/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24859NANA12+14254495..14255190NA
LOC_Os12g24870OsAffx.19810.3.S1_at11/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.2.S1_at5/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.1.S1_x_at3/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.640.1.S1_x_at1/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24880OsAffx.29384.2.S1_at11/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24880OsAffx.29384.1.S1_at2/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24890OsAffx.21465.1.S1_x_at2/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.38172.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.43567.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24900OsAffx.7693.1.S1_x_at11/1112+14279521..14279904hypothetical protein
LOC_Os12g24910OsAffx.31868.1.S1_at10/1112+14296913..14298753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24910OsAffx.7695.1.S1_at4/1112+14296913..14298753retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7693.1.S1_x_at--320--3811Chr12:14279574..14279598 (25 bp)
CTCCTCGCGAACACAACGGTGGCAG
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--77--8251Chr12:14279594..14279618 (25 bp)
GGCAGCGACGACCGAAGGCGACCAT
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--721--4112Chr12:14279606..14279630 (25 bp)
CGAAGGCGACCATAGACGACGACGA
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--832--2551Chr12:14279630..14279654 (25 bp)
AACGGCGCGGCTGTAGATCGGAACA
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--565--10018Chr12:14279643..14279667 (25 bp)
TAGATCGGAACATGACGGCAACCCA
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--965--2591Chr12:14279662..14279686 (25 bp)
AACCCACTGGTTCATAGCGAGGACG
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--775--3331Chr12:14279666..14279690 (25 bp)
CACTGGTTCATAGCGAGGACGGCTT
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--880--10531Chr12:14279672..14279696 (25 bp)
TTCATAGCGAGGACGGCTTCCGGCG
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--387--1851Chr12:14279789..14279813 (25 bp)
ACGACAAACGGCGGCTGGAATTGGT
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--710--1812Chr12:14279792..14279816 (25 bp)
ACAAACGGCGGCTGGAATTGGTGGC
LOC_Os12g24900
OsAffx.7693.1.S1_x_at--984--2371Chr12:14279794..14279818 (25 bp)
AAACGGCGGCTGGAATTGGTGGCGG
LOC_Os12g24900
Target Sequence 
CTCCTCGCGAACACAACGGTGGCAGCGACGACCGAAGGCGACCATAGACGACGACGAACGGCGCGGCTGTAGATCGGAAC
ATGACGGCAACCCACTGGTTCATAGCGAGGACGGCTTCCGGCGAGGTTTCGGCGCAAGGGGAACGGCGGCCAGGGTGGAG
CTTGACCTTGCGGAGCCGAGAGAGGTGGCGGCGCAGGAGAGCGACGGCCGAGGCGACGACAAACGGCGGCTGGAATTGGT
GGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7693.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis