Browse Element(s) Details


OsAffx.7695.1.S1_at

Description tigr:9640.m02408
TID=OsAffx.7695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2523011/11hypothetical protein
LOC_Os12g249104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g311302/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25200Os.27207.1.S1_at10/1112+14484752..14488368Chloride channel protein CLC-a, putative, expressed
LOC_Os12g25200Os.17327.1.S1_at5/1112+14484752..14488368Chloride channel protein CLC-a, putative, expressed
LOC_Os12g25210Os.2348.2.S1_x_at5/1112+14500672..14501760Microsomal signal peptidase 12 kDa subunit family protein
LOC_Os12g25220NANA12+14504401..14507051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25230OsAffx.7695.1.S1_at11/1112+14510876..14511691hypothetical protein
LOC_Os12g25240NANA12+14514640..14514972hypothetical protein
LOC_Os12g25250NANA12+14516707..14518155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25260OsAffx.31873.1.S1_x_at10/1112+14528246..14529435hypothetical protein
LOC_Os12g25260OsAffx.31873.1.S1_at9/1112+14528246..14529435hypothetical protein
LOC_Os12g25270OsAffx.31874.1.S1_at10/1112+14536060..14536517hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7695.1.S1_at--194--652Chr12:14511203..14511227 (25 bp)
ATGCAGCAACCACAGAGTCCGATGC
LOC_Os12g25230
OsAffx.7695.1.S1_at--505--1712Chr12:14511211..14511235 (25 bp)
ACCACAGAGTCCGATGCAACAGATG
LOC_Os12g25230
OsAffx.7695.1.S1_at--819--2593Chr12:14511237..14511259 (23 bp)
AACGACAGTGTCTCCAACAACAGAG
LOC_Os12g25230
OsAffx.7695.1.S1_at--26--2155Chr12:14511541..14511565 (25 bp)
ACAGAGAGACAGCTCAATTCTTCAG
LOC_Os12g25230
OsAffx.7695.1.S1_at--284--5993Chr12:14511546..14511570 (25 bp)
GAGACAGCTCAATTCTTCAGCAGCG
LOC_Os12g25230
OsAffx.7695.1.S1_at--517--4833Chr12:14511552..14511576 (25 bp)
GCTCAATTCTTCAGCAGCGACTGCA
LOC_Os12g25230
OsAffx.7695.1.S1_at--416--3853Chr12:14511572..14511596 (25 bp)
CTGCAGTCAATGTCTCAAGCATCAG
LOC_Os12g25230
OsAffx.7695.1.S1_at--7--3754Chr12:14511585..14511609 (25 bp)
CTCAAGCATCAGACTTCAATGTGGT
LOC_Os12g25230
OsAffx.7695.1.S1_at--1097--392Chr12:14511592..14511616 (25 bp)
ATCAGACTTCAATGTGGTTATCAAC
LOC_Os12g25230
OsAffx.7695.1.S1_at--154--7513Chr12:14511605..14511629 (25 bp)
GTGGTTATCAACATCAGCCATGCAC
LOC_Os12g25230
OsAffx.7695.1.S1_at--949--372Chr12:14511611..14511635 (25 bp)
ATCAACATCAGCCATGCACCTCATG
LOC_Os12g25230
Target Sequence 
ATGCAGCAACCACAGAGTCCGATGCAACAGATGCAACGACAGTGTCTCCAACAACAGAGAGACAGCTCAATTCTTCAGCA
GCGACTGCAGTCAATGTCTCAAGCATCAGACTTCAATGTGGTTATCAACATCAGCCATGCACCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis