Browse Element(s) Details


OsAffx.31873.1.S1_x_at

Description tigr:9640.m02411
TID=OsAffx.31873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2526010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25220NANA12+14504401..14507051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25230OsAffx.7695.1.S1_at11/1112+14510876..14511691hypothetical protein
LOC_Os12g25240NANA12+14514640..14514972hypothetical protein
LOC_Os12g25250NANA12+14516707..14518155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25260OsAffx.31873.1.S1_x_at10/1112+14528246..14529435hypothetical protein
LOC_Os12g25260OsAffx.31873.1.S1_at9/1112+14528246..14529435hypothetical protein
LOC_Os12g25270OsAffx.31874.1.S1_at10/1112+14536060..14536517hypothetical protein
LOC_Os12g25280OsAffx.31875.1.S1_at11/1112+14538586..14539257hypothetical protein
LOC_Os12g25290NANA12+14552987..14556317transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31873.1.S1_x_at--651--9751Chr12:14528289..14528313 (25 bp)
TAATGACCATCAACCCCAAGTGGGA
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--563--6051Chr12:14528315..14528339 (25 bp)
GAGATTACTTGCGAGCTTGAGCCTG
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--1039--4271Chr12:14528360..14528680 (25 bp)
CCTGATCTCGTGGTCTATGGAAAGT
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--833--6411NONE
GATCTCGTGGTCTATGGAAAGTGCA
NONE
OsAffx.31873.1.S1_x_at--322--3791Chr12:14528366..14528686 (25 bp)
CTCGTGGTCTATGGAAAGTGCAGGA
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--1128--3811Chr12:14528695..14528719 (25 bp)
CTGCGAGAGTTCAACGCCACAACTT
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--817--4611Chr12:14528697..14528721 (25 bp)
GCGAGAGTTCAACGCCACAACTTCG
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--204--3271Chr12:14528844..14528865 (22 bp)
CAACTCTCACATGAACGTGGAGACA
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--668--3311Chr12:14528851..14529103 (25 bp)
CACATGAACGTGGAGACAAGGATCT
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--151--3651Chr12:14529144..14529168 (25 bp)
CTTACAGTGTATTGCGAGGCTAACA
LOC_Os12g25260
OsAffx.31873.1.S1_x_at--990--3451Chr12:14529148..14529172 (25 bp)
CAGTGTATTGCGAGGCTAACAGGCA
LOC_Os12g25260
Target Sequence 
TAATGACCATCAACCCCAAGTGGGATGAGATTACTTGCGAGCTTGAGCCTGGCCAGACACCACAAGATCATCCTGATCTC
GTGGTCTATGGAAAGTGCAGGAACAACTACCTGCGAGAGTTCAACGCCACAACTTCGCAAGGCAAGGATTCATACCCGTT
GTATAGGAGACGTAATGACGGTAAGTGTAAGGGGGTTAGAGGACATCCTCTCGATAATAGGTGGGATGTCCCGTACAATC
CTTATCTTCTATGGATGTACAACTCTCACATGAACGTGGAGACAAGGATCTCCGTGATGTTCTTGATAAGGAAGACCCAG
GCAGGTCGATGCTTACAGTGTATTGCGAGGCTAACAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31873.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis