Browse Element(s) Details


OsAffx.31875.1.S1_at

Description tigr:9640.m02413
TID=OsAffx.31875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2528011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25240NANA12+14514640..14514972hypothetical protein
LOC_Os12g25250NANA12+14516707..14518155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25260OsAffx.31873.1.S1_x_at10/1112+14528246..14529435hypothetical protein
LOC_Os12g25260OsAffx.31873.1.S1_at9/1112+14528246..14529435hypothetical protein
LOC_Os12g25270OsAffx.31874.1.S1_at10/1112+14536060..14536517hypothetical protein
LOC_Os12g25280OsAffx.31875.1.S1_at11/1112+14538586..14539257hypothetical protein
LOC_Os12g25290NANA12+14552987..14556317transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25300Os.14491.2.S1_x_at5/1112+14558680..14565849transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g25300OsAffx.22759.1.S1_at5/1112+14558680..14565849transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g25300Os.47463.1.S1_x_at5/1112+14558680..14565849transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31875.1.S1_at--378--2191Chr12:14538949..14538973 (25 bp)
ACACAGCCACTCTCTAGGTCTAGGG
LOC_Os12g25280
OsAffx.31875.1.S1_at--848--3151Chr12:14538962..14538986 (25 bp)
CTAGGTCTAGGGTTAACCTGGCTAT
LOC_Os12g25280
OsAffx.31875.1.S1_at--224--2631Chr12:14538976..14539000 (25 bp)
AACCTGGCTATGGACTTGGGCCGAA
LOC_Os12g25280
OsAffx.31875.1.S1_at--664--8291Chr12:14538981..14539005 (25 bp)
GGCTATGGACTTGGGCCGAAAAATA
LOC_Os12g25280
OsAffx.31875.1.S1_at--603--2231Chr12:14539001..14539025 (25 bp)
AAATATTTGGGCTATTAGGCTATGG
LOC_Os12g25280
OsAffx.31875.1.S1_at--433--6391Chr12:14539035..14539059 (25 bp)
GATATCCGGCAAAAAGTCCCGGATA
LOC_Os12g25280
OsAffx.31875.1.S1_at--46--10151Chr12:14539129..14539153 (25 bp)
TATCCGAATCCGTATCCGATTCTGA
LOC_Os12g25280
OsAffx.31875.1.S1_at--176--551Chr12:14539136..14539160 (25 bp)
ATCCGTATCCGATTCTGAAAATATC
LOC_Os12g25280
OsAffx.31875.1.S1_at--385--10131Chr12:14539157..14539181 (25 bp)
TATCCGAAGAAAATCCGACTGAAGC
LOC_Os12g25280
OsAffx.31875.1.S1_at--649--4091Chr12:14539172..14539196 (25 bp)
CGACTGAAGCTATCCGTATCCGAAA
LOC_Os12g25280
OsAffx.31875.1.S1_at--960--1551Chr12:14539179..14539203 (25 bp)
AGCTATCCGTATCCGAAAACAGGTT
LOC_Os12g25280
Target Sequence 
ACACAGCCACTCTCTAGGTCTAGGGTTAACCTGGCTATGGACTTGGGCCGAAAAATATTTGGGCTATTAGGCTATGGGGA
GCTGCGGATATCCGGCAAAAAGTCCCGGATAGTTTCCGACCGATTCCGTGTTCCGACGGATACCATCGCTACTGTATTCG
AATTCATATCCGAGAAAAACTATCCGAATCCGTATCCGATTCTGAAAATATCCGAAGAAAATCCGACTGAAGCTATCCGT
ATCCGAAAACAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis