Browse Element(s) Details


OsAffx.22759.1.S1_at

Description gb:NM_193440.1
DB_XREF= gi:34913963
GEN=B1110C07.20
TID=OsAffx.22759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (B1110C07.20), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3744011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g020108/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g409407/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g025906/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g720306/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g159605/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g253005/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g312005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g342305/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g032974/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g034764/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g033904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g183203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g184501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g221801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37420Os.10827.1.S1_x_at11/111+21220512..21223649transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g37420Os.46055.2.S1_x_at5/111+21220512..21223649transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g37430OsAffx.25936.7.S1_s_at10/111+21227455..21229868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g37430OsAffx.25936.1.S1_s_at10/111+21227455..21229868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g37430OsAffx.25936.2.S1_x_at5/111+21227455..21229868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g37430OsAffx.25936.5.S1_x_at2/111+21227455..21229868transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g37440OsAffx.22759.1.S1_at11/111+21246719..21249025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37449NANA1+21253625..21254561NA
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22759.1.S1_at--472--52312Chr12:14565181..14565205 (25 bp)
GAATATGCTTTAGCTGCCACTGACC
LOC_Os12g25300
OsAffx.22759.1.S1_at--995--9191Chr01:21247954..21247978 (25 bp)
TGCCACTGACCACGCAGGTGGACAA
LOC_Os01g37440
OsAffx.22759.1.S1_at--415--3531Chr01:21247990..21248014 (25 bp)
CATCGAGGAAGTCCAATTGCATCCA
LOC_Os01g37440
OsAffx.22759.1.S1_at--852--107112Chr12:14565247..14565271 (25 bp)
TTGCATCCAGAGTCGCTAGATCAGT
LOC_Os12g25300
OsAffx.22759.1.S1_at--205--64514Chr12:14565265..14565289 (25 bp)
GATCAGTATCCTAGCCTAATTGTCA
LOC_Os12g25300
OsAffx.22759.1.S1_at--698--97115Chr12:14565281..14565305 (25 bp)
TAATTGTCAAGCTAGCACTTAGTGC
LOC_Os12g25300
OsAffx.22759.1.S1_at--1045--6718Chr12:592443..592467 (25 bp)
GTTCTTGTGAAAGGCCATACCGTCA
LOC_Os12g02010
OsAffx.22759.1.S1_at--220--2119Chr12:14565462..14565486 (25 bp)
ACATCCACATCCGTATCATATTCAG
LOC_Os12g25300
OsAffx.22759.1.S1_at--799--8778Chr12:593102..593126 (25 bp)
TGTTTTTCACGATGAGATACCTCCA
LOC_Os12g02010
OsAffx.22759.1.S1_at--480--2975Chr12:593136..593160 (25 bp)
AATGGACGAGAGAGTGCACACAATC
LOC_Os12g02010
OsAffx.22759.1.S1_at--200--6191Chr01:21248854..21248878 (25 bp)
GAGGACGACTCCAATTCTAGAAGAG
LOC_Os01g37440
Target Sequence 
GAATATGCTTTAGCTGCCACTGACCACGCAGGTGGACAAGATAATGATGACATCGAGGAAGTCCAATTGCATCCAGAGTC
GCTAGATCAGTATCCTAGCCTAATTGTCAAGCTAGCACTTAGTGCTAAAGAGAAGTGTGAAGAGCAAAACCAACGTCACA
ATTTGTTCCAAAGCAAAGTTCTTGTGAAAGGCCATACCGTCAAAATGATTATTGATAGCGGGAGTTGCAACAATTTAGCA
AGTGAAGAGATGGTCAAGAAGCTTGGCTTGACTACCCATCCACATCCACATCCGTATCATATTCAGTGGTTTAATACATG
TGGTAAGATGAAGGAATATGAGGATGTTTTTCACGATGAGATACCTCCAAGGATGGCCAATGGACGAGAGAGTGCACACA
ATCAAGAAGATGGGATTGAGTCGAGGACGACTCCAATTCTAGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis