Browse Element(s) Details


Os.23997.1.S1_at

Description gb:AK068308.1
DB_XREF= gi:32978326
TID=Os.23997.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1110C07.25 (B1110C07.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146J22, full insert sequence.
FL= gb:AK068308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3748011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37440OsAffx.22759.1.S1_at11/111+21246719..21249025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37449NANA1+21253625..21254561NA
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein
LOC_Os01g37490Os.18566.1.S1_at11/111+21277260..21278788dynein light chain, putative, expressed
LOC_Os01g37500OsAffx.23542.1.S1_at10/111+21278933..21280143hypothetical protein
LOC_Os01g37510Os.14593.1.S1_at11/111+21280808..21282357Peptide deformylase, mitochondrial precursor, putative, expressed
LOC_Os01g37520OsAffx.8983.2.S1_at11/111+21284258..21284866hypothetical protein
LOC_Os01g37530OsAffx.2177.1.S1_at11/111+21287471..21287716hypothetical protein
LOC_Os01g37530OsAffx.31891.1.S1_x_at1/111+21287471..21287716hypothetical protein
LOC_Os01g37540NANA1+21291447..21297602transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23997.1.S1_at--485--1351Chr01:21269800..21269824 (25 bp)
AGAGCATGACATTTCCTAGGTGGAA
LOC_Os01g37480
Os.23997.1.S1_at--946--1691Chr01:21269745..21269769 (25 bp)
AGCCAAGACCGCTTCAGCAGTAATT
LOC_Os01g37480
Os.23997.1.S1_at--206--10711Chr01:21269603..21269627 (25 bp)
TTGCTGGAAGCTACTTCTGTGCTGC
LOC_Os01g37480
Os.23997.1.S1_at--250--5111Chr01:21269574..21269598 (25 bp)
GCACTTGTTGGTGTCATAAACCCTG
LOC_Os01g37480
Os.23997.1.S1_at--529--8771Chr01:21269537..21269561 (25 bp)
TGTTTGGTACCCTTTTGGTTATCTG
LOC_Os01g37480
Os.23997.1.S1_at--991--5411Chr01:21269499..21269523 (25 bp)
GAAGCGCTCTTTGGGAAACCGGTGA
LOC_Os01g37480
Os.23997.1.S1_at--396--7171Chr01:21269365..21269389 (25 bp)
GTCTGTTTCAATCACTAAGCCTCTG
LOC_Os01g37480
Os.23997.1.S1_at--996--9791Chr01:21269350..21269374 (25 bp)
TAAGCCTCTGCAAAGTTCTGCCAAG
LOC_Os01g37480
Os.23997.1.S1_at--1136--2151Chr01:21269310..21269334 (25 bp)
ACACTTCATTGTCTATTTGCCCCTT
LOC_Os01g37480
Os.23997.1.S1_at--779--3651Chr01:21269288..21269312 (25 bp)
CTTCATCCTTGTAGTTCATTTCCAC
LOC_Os01g37480
Os.23997.1.S1_at--219--9811Chr01:21269194..21269218 (25 bp)
TAACCTTCAGTTTTCACCTTTGTAT
LOC_Os01g37480
Target Sequence 
AGAGCATGACATTTCCTAGGTGGAATGACCTGTTTGATATTTACAATTTGACAGAAGCCAAGACCGCTTCAGCAGTAATT
GATCTCCAGCGTCTAGAGATTCTTGCTGGAAGCTACTTCTGTGCTGCTGGAGCACTTGTTGGTGTCATAAACCCTGGGAG
GATGACCTTGTTTGGTACCCTTTTGGTTATCTGGGGTCTAGTGAAAGAAGCGCTCTTTGGGAAACCGGTGAACAGTGATC
CAACACAATCAGTTCATGTNTATCCGACCATTTTAATTGCACTGATTTGTGCATTCTTGTCAATAACTTACAATGTAAAG
AAGACAGTAAGAAATAGTCAGTCTGTTTCAATCACTAAGCCTCTGCAAAGTTCTGCCAAGTCGAAACTGAAGTAGACACT
TCATTGTCTATTTGCCCCTTCATCCTTGTAGTTCATTTCCACAAATTTATTGTTGAAGACTGGCCCAAAGGATAACACTA
CTGTGGTTCTTGTGTACCACTTTGAATACTGTAACCTTCAGTTTTCACCTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis