Browse Element(s) Details


Os.14593.1.S1_at

Description gb:AK062551.1
DB_XREF= gi:32972569
TID=Os.14593.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14593 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) peptide deformylase-like protein (B1110C07.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H02, full insert sequence.
FL= gb:AK062551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3751011/11Peptide deformylase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein
LOC_Os01g37490Os.18566.1.S1_at11/111+21277260..21278788dynein light chain, putative, expressed
LOC_Os01g37500OsAffx.23542.1.S1_at10/111+21278933..21280143hypothetical protein
LOC_Os01g37510Os.14593.1.S1_at11/111+21280808..21282357Peptide deformylase, mitochondrial precursor, putative, expressed
LOC_Os01g37520OsAffx.8983.2.S1_at11/111+21284258..21284866hypothetical protein
LOC_Os01g37530OsAffx.2177.1.S1_at11/111+21287471..21287716hypothetical protein
LOC_Os01g37530OsAffx.31891.1.S1_x_at1/111+21287471..21287716hypothetical protein
LOC_Os01g37540NANA1+21291447..21297602transposon protein, putative, unclassified
LOC_Os01g37550NANA1+21298234..21301476transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0001718biological_processconversion of met-tRNAf to fmet-tRNA
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0042586molecular_functionpeptide deformylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14593.1.S1_at--961--3631Chr01:21281316..21281340 (25 bp)
CTTCAGGATGGCAGGCACGTATCCT
LOC_Os01g37510
Os.14593.1.S1_at--66--5111Chr01:21281302..21281326 (25 bp)
GCACGTATCCTGCAGCACGAATGTG
LOC_Os01g37510
Os.14593.1.S1_at--973--5091Chr01:21281288..21281312 (25 bp)
GCACGAATGTGATCATCTTGAAGGT
LOC_Os01g37510
Os.14593.1.S1_at--843--4911Chr01:21281201..21281225 (25 bp)
GCTTCCTGTTGGATGCCCTCCAATA
LOC_Os01g37510
Os.14593.1.S1_at--192--611Chr01:21281189..21281213 (25 bp)
ATGCCCTCCAATAGGTGCACGCTGA
LOC_Os01g37510
Os.14593.1.S1_at--837--8051Chr01:21281161..21281185 (25 bp)
GGAGAGCATTCCACATTTTAAAATT
LOC_Os01g37510
Os.14593.1.S1_at--768--6631Chr01:21280952..21280976 (25 bp)
GTTGTTGGTTGTAAGATGTTCGCTC
LOC_Os01g37510
Os.14593.1.S1_at--232--6291Chr01:21280938..21280962 (25 bp)
GATGTTCGCTCAATGTTTTTTGTAT
LOC_Os01g37510
Os.14593.1.S1_at--824--8751Chr01:21280918..21280942 (25 bp)
TGTATGGTGTCCATGGACTCTGGGA
LOC_Os01g37510
Os.14593.1.S1_at--78--8071Chr01:21280896..21280920 (25 bp)
GGAGAACAGGAATTTTACACTTCAA
LOC_Os01g37510
Os.14593.1.S1_at--37--10731Chr01:21280827..21280851 (25 bp)
TTGCAATACCATACACTTAATAGTG
LOC_Os01g37510
Target Sequence 
CTTCAGGATGGCAGGCACGTATCCTGCAGCACGAATGTGATCATCTTGAAGGTACATTNNNNNTTGNNNNNANNNTNNNT
NNNNCNNTNNNNNTTGNNNNNNNNNNNNNNNTTCCGCTTCCTGTTGGATGCCCTCCAATAGGTGCACGCTGAGGTGGAGA
GCATTCCACATTTTAAAATTTCCAAGTAGAGATAATTGCACTCTATAGTATACATAAAATTTATCCCAAGTATAATATTT
GCANTTGCTGCTTATTTCTGTGATTGCCNATTTTCCATGAATTGATTNTTTCAATGTCTGTTGTGGTNCATACACATGCN
GGAGAATCACNNCCTTGTATGTTGAATTGACATCATGTGGTAACANTTCGTTGTTGGTTGTAAGATGTTCGCTCAATGTT
TTTTGTATGGTGTCCATGGACTCTGGGAGAACAGGAATTTTACACTTCAATAGAACTGTACCTNTTCCNCCAGTTTTTGT
CTCTTCAACATAATTTGCAATACCATACACTTAATAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis