Browse Element(s) Details


Os.18566.1.S1_at

Description gb:AU030701
DB_XREF= gi:3766591
DB_XREF=AU030701
CLONE=E60128_2Z
TID=Os.18566.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) dynein light chain - like protein (B1110C07.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3749011/11dynein light chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37449NANA1+21253625..21254561NA
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein
LOC_Os01g37490Os.18566.1.S1_at11/111+21277260..21278788dynein light chain, putative, expressed
LOC_Os01g37500OsAffx.23542.1.S1_at10/111+21278933..21280143hypothetical protein
LOC_Os01g37510Os.14593.1.S1_at11/111+21280808..21282357Peptide deformylase, mitochondrial precursor, putative, expressed
LOC_Os01g37520OsAffx.8983.2.S1_at11/111+21284258..21284866hypothetical protein
LOC_Os01g37530OsAffx.2177.1.S1_at11/111+21287471..21287716hypothetical protein
LOC_Os01g37530OsAffx.31891.1.S1_x_at1/111+21287471..21287716hypothetical protein
LOC_Os01g37540NANA1+21291447..21297602transposon protein, putative, unclassified
LOC_Os01g37550NANA1+21298234..21301476transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005875cellular_componentmicrotubule associated complex
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18566.1.S1_at--77--3531Chr01:21278164..21278188 (25 bp)
CATGAAGGAGGTCGTCTCTGTGCTT
LOC_Os01g37490
Os.18566.1.S1_at--1040--4831Chr01:21278079..21278103 (25 bp)
GCTAAGCGGTCCCATGATAGCTTGG
LOC_Os01g37490
Os.18566.1.S1_at--697--2111Chr01:21277624..21277648 (25 bp)
ACATGGCATTGCATCGTCGGCACAA
LOC_Os01g37490
Os.18566.1.S1_at--569--611Chr01:21277578..21277602 (25 bp)
ATGCGAGAGGCTGTTTCCTCTACTT
LOC_Os01g37490
Os.18566.1.S1_at--517--9771Chr01:21277544..21277568 (25 bp)
TAAGATCATCGTGATGCTGTTCAAG
LOC_Os01g37490
Os.18566.1.S1_at--329--2091Chr01:21277465..21277489 (25 bp)
ACATATCTCTTGTCTCAATGGTCAA
LOC_Os01g37490
Os.18566.1.S1_at--98--3211Chr01:21277450..21277474 (25 bp)
CAATGGTCAATACACTTCCATCATG
LOC_Os01g37490
Os.18566.1.S1_at--192--10511Chr01:21277408..21277432 (25 bp)
TTAATTAGTCTAGCTCTGTGAGAGT
LOC_Os01g37490
Os.18566.1.S1_at--533--351Chr01:21277354..21277378 (25 bp)
ATAATTGTTTTGTCCGTGAGTTGCA
LOC_Os01g37490
Os.18566.1.S1_at--1071--10771Chr01:21277345..21277369 (25 bp)
TTGTCCGTGAGTTGCAAGTTGCAGC
LOC_Os01g37490
Os.18566.1.S1_at--1070--3371Chr01:21277324..21277348 (25 bp)
CAGCTGAACAAGTACTGTGGTTGGA
LOC_Os01g37490
Target Sequence 
CATGAAGGAGGTCGTCTCTGTGCTTGGTNTGAAGGTGATGGCTGCAGACATGTCNCCATTTATGCAGCTGCATGCTTTCC
GGTNTGCTAAGCGGTCCCATGATAGCTTGGNCAAGTTCAGCTCAAGGCAGCTGGCCCNTGATGTGAAGAAGGAGTTTGAT
AAAGTTTATGGNCCTACATGGCATTGCATCGTCGGCACAAGCTNCGGCTCTTTCGTGACNCATGCGAGAGGCTGTTTCCT
CTACTTCNCCNTGGATAAGATCATCGTGATGCTGTTCAAGNCCAAGATCAGGAAAGTGTTAGCATCATCTTGNGCTCCAT
AGGGNCCANCCATGACATATCTCTTGTCTCAATGGTCAATACACTTCCATCATGNGAAAAAAAAAGGGTAATTAATTAGT
CTAGCTCTGTGAGAGTGAAGAAACAGGGGAAGAAAACCNCCTCAAATAATTGTTTTGTCCGTGAGTTGCAAGTTGCAGCT
GAACAAGTACTGTGGTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis