Browse Element(s) Details


Os.17327.1.S1_at

Description gb:BI812618
DB_XREF= gi:16578523
DB_XREF=F004E04
CLONE=F004E04
TID=Os.17327.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17327 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g252005/11Chloride channel protein CLC-a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25190Os.27639.1.S1_x_at5/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190OsAffx.8980.1.S1_at3/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25190Os.53731.1.S1_at1/1112+14469211..14474666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25200Os.27207.1.S1_at10/1112+14484752..14488368Chloride channel protein CLC-a, putative, expressed
LOC_Os12g25200Os.17327.1.S1_at5/1112+14484752..14488368Chloride channel protein CLC-a, putative, expressed
LOC_Os12g25210Os.2348.2.S1_x_at5/1112+14500672..14501760Microsomal signal peptidase 12 kDa subunit family protein
LOC_Os12g25220NANA12+14504401..14507051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25230OsAffx.7695.1.S1_at11/1112+14510876..14511691hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0010167biological_processresponse to nitrate
GO:0005622cellular_componentintracellular
GO:0005247molecular_functionvoltage-gated chloride channel activity
GO:0005253molecular_functionanion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17327.1.S1_at--933--2911Chr12:14485684..14485706 (23 bp)
AAGGACCCGAGGTCAGCGCCAAACA
LOC_Os12g25200
Os.17327.1.S1_at--131--7831Chr12:14485671..14485696 (25 bp)
GGTCAGCGCCAAACACAGACTGAAT
LOC_Os12g25200
Os.17327.1.S1_at--1127--5711NONE
GACTGAATTTTACTCCTGGTTTACA
NONE
Os.17327.1.S1_at--399--9911NONE
TACTCCTGGTTTACAGACGATCCAA
NONE
Os.17327.1.S1_at--364--3412Chr09:22012687..22012924 (25 bp)
CAGACGATCCAAGTCAAACTGTTTT
NONE
Os.17327.1.S1_at--873--2471NONE
AACATTTTCAACTAAGACCAATTTG
NONE
Os.17327.1.S1_at--921--6871NONE
GTATGAATTTAGTCAACTTAAAGCA
NONE
Os.17327.1.S1_at--894--2031NONE
ACTTTGATTAAAGTCAAGCGTCTTA
NONE
Os.17327.1.S1_at--1018--9831NONE
TAAAGTCAAGCGTCTTATAATCTGA
NONE
Os.17327.1.S1_at--62--10351Chr12:14485388..14485412 (25 bp)
TTTACTTATTATTTTCCAACTACAT
LOC_Os12g25200
Os.17327.1.S1_at--586--10411Chr12:14485380..14485404 (25 bp)
TTATTTTCCAACTACATTCCTGGAT
LOC_Os12g25200
Target Sequence 
AAGGACCCGAGGTCAGCGCCAAACACAGACTGAATTTTACTCCTGGTTTACAGACGATCCAAGTCAAACTGTTTTAAATT
TTGATCAAAGTTTTATAGGAAAAAAATAATAATAACATTTTCAACTAAGACCAATTTGTTATAAATATATATTCAATTAT
TGGTTTGATGAAACTTATTTAGTATTATAAATATTATCATATTTGTGTATGAATTTAGTCAACTTAAAGCAGTTTAACTT
TGATTAAAGTCAAGCGTCTTATAATCTGAAACAGAGTAAGTATTTGTTTATTAATTTACTTATTATTTTCCAACTACATT
CCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis