Browse Element(s) Details


Os.53731.1.S1_at

Description gb:AK099596.1
DB_XREF= gi:32984805
TID=Os.53731.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045D06, full insert sequence.
FL= gb:AK099596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5375011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g148106/11transposon protein, putative, unclassified
LOC_Os02g129703/11transposon protein, putative, unclassified, expressed
LOC_Os04g542803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g072903/11transposon protein, putative, unclassified
LOC_Os12g382802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g129502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g082102/11transposon protein, putative, unclassified
LOC_Os01g450502/11transposon protein, putative, unclassified
LOC_Os01g450402/11hypothetical protein
LOC_Os04g155702/11transposon protein, putative, unclassified
LOC_Os10g219502/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g316501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g251901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g249101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g444001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g537901/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53731.1.S1_at--606--10631Chr04:31806481..31806505 (25 bp)
TTGCCCACCAAATCAACTTACCAAT
LOC_Os04g53750
Os.53731.1.S1_at--901--2251Chr04:31806490..31806514 (25 bp)
AAATCAACTTACCAATGCCTGTTAG
LOC_Os04g53750
Os.53731.1.S1_at--84--1711Chr04:31806500..31806524 (25 bp)
ACCAATGCCTGTTAGATAGATCTCT
LOC_Os04g53750
Os.53731.1.S1_at--458--70958Chr12:12685046..12685070 (25 bp)
GTCACACTGCGCCATATAAAAGAGG
NONE
Os.53731.1.S1_at--961--21122Chr07:8462166..8462186 (21 bp)
ACATGGTACGAGATTCACCGCCGCC
NONE
Os.53731.1.S1_at--1106--36352Chr11:21100752..21100776 (25 bp)
CTACAAACCCTAATCCGATCGAGAG
NONE
Os.53731.1.S1_at--466--5311Chr12:23478137..23478161 (25 bp)
ATCGCCGGGACATCTACGACCGTCA
NONE
Os.53731.1.S1_at--586--33728Chr12:20812996..20813020 (25 bp)
CACCTCAACCGGTCGGTCTATCTAA
NONE
Os.53731.1.S1_at--34--38121Chr11:21100972..21100996 (25 bp)
CTCCCGTTTTCAATCTCTATAGTTC
NONE
Os.53731.1.S1_at--479--9914Chr12:23478268..23478418 (25 bp)
TATAGTTCAAACATCAAACCCAAAT
NONE
Os.53731.1.S1_at--428--59517Chr07:8456582..8456606 (25 bp)
GAGCAACCCTAGTGTTTAGATCGTT
LOC_Os07g14810
Target Sequence 
TTGCCCACCAAATCAACTTACCAATGCCTGTTAGATAGATCTCTCTCCCCTTGAGCCCAACGGCTCAAGGGGGCCTTGAC
CGCGCCCTGATCGGGGGCGCCCAGCCCAATGGCTGGTGGGCCCCCGTCACACTGCGCCATATAAAAGAGGGGTGGAGGCC
GGCACGGCACATGGTACGAGATTCACCGCCGCCGCCAACTCCACCCTACAAACCCTAATCCGATCGAGAGGGGGCGCAGC
CAGTGACGGGAAGCGCCACCGCCGCGCCAGACCTCATCGCCGGGACATCTACGACCGTCACTCCCGCAGCCGTCATCGCC
GTCGACCTCACCGGCGCCGCATCCACGACAACCGAGCGCCAACGACGACGATGGCCGGCACTTCTTCATCCTCCAACACC
TCAACCGGTCGGTCTATCTAAACCCTCTCCCGTTTTCAATCTCTATAGTTCAAACATCAAACCCAAATAGAACCACCCGA
CTAGATCTAACCTAGGTGATCCTAGTGCAAAGTTTAACAATGGTATCAGAGCAACCCTAGTGTTTAGATCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis