Browse Element(s) Details


Os.56185.1.S1_at

Description gb:AK109572.1
DB_XREF= gi:32994781
TID=Os.56185.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E03, full insert sequence.
FL= gb:AK109572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g537309/11expressed protein
LOC_Os04g574201/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56185.1.S1_at--1152--4251Chr04:31798686..31798710 (25 bp)
CCGGCCCATGGGTGAAAGCAAGTCG
LOC_Os04g53730
Os.56185.1.S1_at--946--8391Chr04:31798684..31798708 (25 bp)
GGCCCATGGGTGAAAGCAAGTCGCT
LOC_Os04g53730
Os.56185.1.S1_at--414--4551Chr04:31798683..31798707 (25 bp)
GCCCATGGGTGAAAGCAAGTCGCTT
LOC_Os04g53730
Os.56185.1.S1_at--74--811Chr04:31798679..31798703 (25 bp)
ATGGGTGAAAGCAAGTCGCTTCGGA
LOC_Os04g53730
Os.56185.1.S1_at--240--7371Chr04:31798675..31798699 (25 bp)
GTGAAAGCAAGTCGCTTCGGAGTAT
LOC_Os04g53730
Os.56185.1.S1_at--380--2731Chr04:31798671..31798695 (25 bp)
AAGCAAGTCGCTTCGGAGTATATTT
LOC_Os04g53730
Os.56185.1.S1_at--182--1491Chr04:31798670..31798694 (25 bp)
AGCAAGTCGCTTCGGAGTATATTTT
LOC_Os04g53730
Os.56185.1.S1_at--477--10312Chr04:33949787..33950000 (25 bp)
TTTCTGTTGTATTTTTCTTCTTCTG
LOC_Os04g57420
Os.56185.1.S1_at--367--5231Chr04:31798606..31798630 (25 bp)
GAATTTGAAATACTATGATGGCTGT
LOC_Os04g53730
Os.56185.1.S1_at--662--2031Chr04:31798579..31798619 (25 bp)
ACTATGATGGCTGTGAATTGTTTCT
NONE
Os.56185.1.S1_at--921--10111NONE
TATGATGGCTGTGAATTGTTTCTAC
NONE
Target Sequence 
CCGGCCCATGGGTGAAAGCAAGTCGCTTCGGAGTATATTTTTTTTCTTCTTTTTTTTTTCTGTTGTATTTTTCTTCTTCT
GAATTTGAAATACTATGATGGCTGTGAATTGTTTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis