Browse Element(s) Details


Os.21263.1.S1_at

Description gb:AK065665.1
DB_XREF= gi:32975683
TID=Os.21263.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033008O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041I04, full insert sequence.
FL= gb:AK065665.1 gb:AK099320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5370011/11MYND finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21263.1.S1_at--369--6771Chr04:31784526..31784550 (25 bp)
GTTACAAGGCCATTTCTAGATGCTT
LOC_Os04g53700
Os.21263.1.S1_at--547--5371Chr04:31784496..31784520 (25 bp)
GAAGACTATGCAGCTCCTTGTGAGG
LOC_Os04g53700
Os.21263.1.S1_at--18--5031Chr04:31784186..31784210 (25 bp)
GCAGTGATAATTGCTCTGGAGCCTA
LOC_Os04g53700
Os.21263.1.S1_at--599--6051Chr04:31784038..31784061 (24 bp)
GAGATTACCATATCCTACATCGATG
LOC_Os04g53700
Os.21263.1.S1_at--123--9891Chr04:31784023..31784047 (25 bp)
TACATCGATGAGGATGTCTCCTACG
LOC_Os04g53700
Os.21263.1.S1_at--60--4691Chr04:31783987..31784011 (25 bp)
GCGGAGCTTGCAGATTATGGATTCA
LOC_Os04g53700
Os.21263.1.S1_at--214--10111Chr04:31783972..31783996 (25 bp)
TATGGATTCATCTGTACGTGCCCTA
LOC_Os04g53700
Os.21263.1.S1_at--695--6991Chr04:31783959..31783983 (25 bp)
GTACGTGCCCTAGGTGCCAAGAAGA
LOC_Os04g53700
Os.21263.1.S1_at--1070--5331Chr04:31783862..31783886 (25 bp)
GAAGTTTTGACGACTCCATTTATTT
LOC_Os04g53700
Os.21263.1.S1_at--153--7991Chr04:31783737..31783761 (25 bp)
GGATGCTGGATTTTGCTGTGCTAAT
LOC_Os04g53700
Os.21263.1.S1_at--223--10371Chr04:31783693..31783717 (25 bp)
TTTTATTCCTTCTGTTCAGTTGAGA
LOC_Os04g53700
Target Sequence 
GTTACAAGGCCATTTCTAGATGCTTTAGGTGAAGACTATGCAGCTCCTTGTGAGGGGACGGCATTCTTTCCTTTGCAAAG
CTGTATGAATCATTCATGTTGTCCAAATGCTAAAGCATATAAAAGGGATGAGGATACTGATGGTAATGCAGTGATAATTG
CTCTGGAGCCTATCAAGAAGGACGATGAGATTACCATATCCTACATCGATGAGGATGTCTCCTACGAGGAGAGGCAGGCG
GAGCTTGCAGATTATGGATTCATCTGTACGTGCCCTAGGTGCCAAGAAGAAAAGCCCAACTGAACAAGATCCACAGTTTG
GAGGTTCCTGAAATTTATTTTTTTGGTGTGGAATATGCAATTGAAGTTTTGACGACTCCATTTATTTTATTTTTTTTGTC
TAGGATATGCAATTGAGATTTTGACAACTCCAAAAATGTTAGGATAGGATATGCGGAAAGAATGATATGATACGTACTTA
TTTGAGTGGATGCTGGATTTTGCTGTGCTAATGTTGGATGCTGCAGAAAGTTTTTATTCCTTCTGTTCAGTTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis