Browse Element(s) Details


Os.8795.1.S1_at

Description gb:AK121640.1
DB_XREF= gi:37991263
TID=Os.8795.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055A13, full insert sequence.
FL= gb:AK121640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5367011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os04g53630NANA4+31747400..31749238pentatricopeptide, putative, expressed
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8795.1.S1_at--1063--3031Chr04:31763840..31763864 (25 bp)
AATCGACAATACTTTTTCACCTAGG
LOC_Os04g53670
Os.8795.1.S1_at--1006--6791Chr04:31763796..31763820 (25 bp)
GTTTTGGCAGCATAGGTACTCCTAG
LOC_Os04g53670
Os.8795.1.S1_at--733--10091Chr04:31763774..31763798 (25 bp)
TAGGACTCCTAATCTGCACTCAACT
LOC_Os04g53670
Os.8795.1.S1_at--609--2951Chr04:31763680..31763704 (25 bp)
AAGGCCAAATGTACAGCCCTCGTTT
LOC_Os04g53670
Os.8795.1.S1_at--413--6171Chr04:31763638..31763662 (25 bp)
GAGGATCAGAAATGCGCCGAAGACA
LOC_Os04g53670
Os.8795.1.S1_at--535--5932Chr08:23055954..23055978 (23 bp)
GAGCATGCAATCCTTGGTGACAAAA
NONE
Os.8795.1.S1_at--645--6671Chr04:31763526..31763550 (25 bp)
GTATAGGTTCGTGCAGTCCAAAACT
LOC_Os04g53670
Os.8795.1.S1_at--645--2871Chr04:31763498..31763522 (25 bp)
AAGTGGCTAATGCTGTACTTCCTCT
LOC_Os04g53670
Os.8795.1.S1_at--709--7011Chr04:31763484..31763508 (25 bp)
GTACTTCCTCTTCATTATTCTTTTT
LOC_Os04g53670
Os.8795.1.S1_at--803--8671Chr04:31763460..31763484 (25 bp)
TGTGTACATCTTTATGTTCCTTGGG
LOC_Os04g53670
Os.8795.1.S1_at--516--6951Chr04:31763361..31763385 (25 bp)
GTAGCACTGTGTTCAAAACTTCAAG
LOC_Os04g53670
Target Sequence 
AATCGACAATACTTTTTCACCTAGGAAGTTGAGCAGGCAGAACAGTTTTGGCAGCATAGGTACTCCTAGGACTCCTAATC
TGCACTCAACTACAGATGCAGGAACGAAAGAGTTACTGGAATCAACAGTTGCTTCATTACAAATCGAAATCTTAGAATCC
AAGGCCAAATGTACAGCCCTCGTTTCCCAGGCGAGCGGTGTGGAGGATCAGAAATGCGCCGAAGACATCAGGCAATTGAA
TGACAAGCTAGAGAGCATGCAATCCTTGGTGACAAAATTGAGAACTTTGATCTAAGTTGCACATAGTTTTTTGTGTATAG
GTTCGTGCAGTCCAAAACTTGGAAGTGGCTAATGCTGTACTTCCTCTTCATTATTCTTTTTGTGTACATCTTTATGTTCC
TTGGGGTGTATACAGGTGGATTCTGGAATAATGAGCTGACACGCAGCAAATATAAAATTTTGTAGCTGGAATGTCACATG
TAGCACTGTGTTCAAAACTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis