Browse Element(s) Details


Os.4415.1.S1_at

Description gb:AK058319.1
DB_XREF= gi:32968337
TID=Os.4415.1
CNT=75
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for poly-ubiquitin, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A10, full insert sequence.
FL= gb:AK058319.1 gb:AK102389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5362011/11polyubiquitin containing 7 ubiquitin monomers, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53580Os.52543.1.S1_at9/114+31718401..31720127p21-rho-binding domain-containing protein, putative, expressed
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os04g53630NANA4+31747400..31749238pentatricopeptide, putative, expressed
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007568biological_processaging
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4415.1.S1_at--1077--4271Chr04:31745581..31745605 (25 bp)
CCTGCGCCTTCGTGGAGGTATGCAG
LOC_Os04g53620
Os.4415.1.S1_at--469--4731Chr04:31745840..31745864 (25 bp)
GCTGTGGTGCAGCATTGGACTTCAT
LOC_Os04g53620
Os.4415.1.S1_at--48--8531Chr04:31745855..31745879 (25 bp)
TGGACTTCATTATACCTATGCCGCT
LOC_Os04g53620
Os.4415.1.S1_at--341--4811Chr04:31745877..31745901 (25 bp)
GCTCGTCTGTCATATCATCGTGTCA
LOC_Os04g53620
Os.4415.1.S1_at--538--3551Chr04:31745892..31745916 (25 bp)
CATCGTGTCATGGTTGTGTTGTGTT
LOC_Os04g53620
Os.4415.1.S1_at--1012--3491Chr04:31745900..31745924 (25 bp)
CATGGTTGTGTTGTGTTCTGGTTTA
LOC_Os04g53620
Os.4415.1.S1_at--507--10031Chr04:31745923..31745947 (25 bp)
TAGAGTCCCTAAGTTGTGTTGATAC
LOC_Os04g53620
Os.4415.1.S1_at--874--7411Chr04:31745938..31745962 (25 bp)
GTGTTGATACTATTATCCATACTAG
LOC_Os04g53620
Os.4415.1.S1_at--1143--7031Chr04:31745962..31745986 (25 bp)
GTACAATTTGCTTCACTGTGCATCG
LOC_Os04g53620
Os.4415.1.S1_at--89--10512Chr04:31745973..31745997 (25 bp)
TTCACTGTGCATCGGTACCAATCGA
LOC_Os04g53620
Os.4415.1.S1_at--941--6511Chr04:31745999..31746023 (25 bp)
GATATTATCATTCTACTTCTGTTAA
LOC_Os04g53620
Target Sequence 
CCTGCGCCTTCGTGGAGGTATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTG
ACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGC
AAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTTGTCCTGCGCCTCCG
TGGTGGTCTCTGAGCGTGTGCTGTGGTGCAGCATTGGACTTCATTATACCTATGCCGCTCGTCTGTCATATCATCGTGTC
ATGGTTGTGTTGTGTTCTGGTTTAGAGTCCCTAAGTTGTGTTGATACTATTATCCATACTAGTACAATTTGCTTCACTGT
GCATCGGTACCAATCGATGATATTATCATTCTACTTCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis