Browse Element(s) Details


OsAffx.4169.1.S1_at

Description tigr:9632.m05202
TID=OsAffx.4169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5360011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53560OsAffx.4168.1.S1_s_at11/114+31713539..31714647expressed protein
LOC_Os04g53580Os.52543.1.S1_at9/114+31718401..31720127p21-rho-binding domain-containing protein, putative, expressed
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os04g53630NANA4+31747400..31749238pentatricopeptide, putative, expressed
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4169.1.S1_at--765--7791Chr04:31737375..31737399 (25 bp)
GGTCGGACATTAGCAGGGTGTTCTA
LOC_Os04g53600
OsAffx.4169.1.S1_at--745--7711Chr04:31737390..31737414 (25 bp)
GGGTGTTCTACATCCAAGACATCGT
LOC_Os04g53600
OsAffx.4169.1.S1_at--1052--9571Chr04:31737417..31737441 (25 bp)
TCTTGGAAGGGAAGCTGTACGCCGT
LOC_Os04g53600
OsAffx.4169.1.S1_at--418--9371Chr04:31737468..31737492 (25 bp)
TCGACGACGCGGACATCGAGCACTA
LOC_Os04g53600
OsAffx.4169.1.S1_at--1000--6051Chr04:31737563..31737587 (25 bp)
GAGTTCTACCTGGTTGCCTGCCACA
LOC_Os04g53600
OsAffx.4169.1.S1_at--634--1191Chr04:31737604..31737628 (25 bp)
AGTAGTTTCCAGAGACTTCGGCAGA
LOC_Os04g53600
OsAffx.4169.1.S1_at--696--4571Chr04:31737667..31737691 (25 bp)
GCGCTACCACACATCTAGATTCAAG
LOC_Os04g53600
OsAffx.4169.1.S1_at--1153--8571Chr04:31738340..31738364 (25 bp)
TGGGAGGCCGTCACGTTCCTACGGA
LOC_Os04g53600
OsAffx.4169.1.S1_at--205--6571Chr04:31738368..31738392 (25 bp)
GATTCCGGAGCGTGCTCGACGACAG
LOC_Os04g53600
OsAffx.4169.1.S1_at--35--5791Chr04:31738385..31738409 (25 bp)
GACGACAGCCCGTGGAGCTCAATAC
LOC_Os04g53600
OsAffx.4169.1.S1_at--960--8071Chr04:31738398..31738422 (25 bp)
GGAGCTCAATACCACATTATCATAG
LOC_Os04g53600
Target Sequence 
GGTCGGACATTAGCAGGGTGTTCTACATCCAAGACATCGTGTTCTTGGAAGGGAAGCTGTACGCCGTCACCGAAGCGGAG
GAGATCTTCGCCTTCGACGACGCGGACATCGAGCACTACTCGCACTTGCCCAGCGACCAGTGGCGGTGGACGCATGTCGA
CAAGCAGGCGCCGGCGTTTGGCCGCACCGAGTTCTACCTGGTTGCCTGCCACACGATGGGGAAGGTTCTAGTAGTTTCCA
GAGACTTCGGCAGAGCCCGCGTCCCCGACACCGGTGGCGGCCGCGCCGCGGCGCGCTACCACACATCTAGATTCAAGGTC
GGGTCGTCGGTGCAGGAGGCGAAGCAGATGGCGGCATGGGAGGCCGTCACGTTCCTACGGAGCCGATTCCGGAGCGTGCT
CGACGACAGCCCGTGGAGCTCAATACCACATTATCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis