Browse Element(s) Details


Os.52009.1.S1_at

Description gb:AK064525.1
DB_XREF= gi:32974543
TID=Os.52009.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-G08, full insert sequence.
FL= gb:AK064525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5361211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53580Os.52543.1.S1_at9/114+31718401..31720127p21-rho-binding domain-containing protein, putative, expressed
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os04g53630NANA4+31747400..31749238pentatricopeptide, putative, expressed
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52009.1.S1_at--694--2291Chr04:31741131..31741155 (25 bp)
AAATGTTGTGATTTTGCCCAAGACA
LOC_Os04g53612
Os.52009.1.S1_at--151--9951Chr04:31741044..31741068 (25 bp)
TACCCATTGATCTGAGTGAGAGCCC
LOC_Os04g53612
Os.52009.1.S1_at--376--10591Chr04:31740994..31741018 (25 bp)
TTCTGTGGACAACTTCGTGCATGGT
LOC_Os04g53612
Os.52009.1.S1_at--563--10531Chr04:31740940..31740964 (25 bp)
TTCAGAGCGATTACTTTGCTGCCCT
LOC_Os04g53612
Os.52009.1.S1_at--782--3671Chr04:31740917..31740941 (25 bp)
CTTTCATTTGTTCATCCTCCATCAT
LOC_Os04g53612
Os.52009.1.S1_at--892--9251Chr04:31740839..31740863 (25 bp)
TCCTCTGCTTGACTACTGTAACATC
LOC_Os04g53612
Os.52009.1.S1_at--508--3612Chr05:19425760..19425854 (24 bp)
CATTGGTTTCTGCTGTTTTGTGTAA
NONE
Os.52009.1.S1_at--78--1691Chr04:31740741..31740765 (25 bp)
AGCCATGTAGAGACGCCTTGTTGCA
LOC_Os04g53612
Os.52009.1.S1_at--762--10791Chr04:31740662..31740686 (25 bp)
TTGTAAGCCCTAGTCAAAATCCCTC
LOC_Os04g53612
Os.52009.1.S1_at--263--3051Chr04:31740645..31740669 (25 bp)
AATCCCTCCTTGAAGCTGTAATCTG
LOC_Os04g53612
Os.52009.1.S1_at--397--7571Chr04:31740602..31740626 (25 bp)
GGGCTCCTTTTGCTGTGCCAATAAT
LOC_Os04g53612
Target Sequence 
AAATGTTGTGATTTTGCCCAAGACATTAGTTCTTTGAAGACTGCATGTTATCAGAATTCAGGAGGTCAGAACTAACACAA
TTATTTATACCCATTGATCTGAGTGAGAGCCCTCAGATGATAACAAGGGAAAATTGTTTCTGTGGACAACTTCGTGCATG
GTAATTTATCGACTATCAGCATTGTTAAGTATTCAGAGCGATTACTTTGCTGCCCTTTCATTTGTTCATCCTCCATCATT
TGCCAAGAATACGGGTGGAAGGGCTTTATGAGCCTGCTGTTTGGTCTTCTTCTCCTCTGCTTGACTACTGTAACATCATT
GGTTTCTGCTGTTTTGTGTAAACTTTCTCACATTACCTAGACATCCTTATAGGCAGTTCTGTTATAAGTTAGCCATGTAG
AGACGCCTTGTTGCAAGCTGCAACATATGGTGTGGAACATCACAGAGGAATGTAATATCACTTGCTGTATTGTAAGCCCT
AGTCAAAATCCCTCCTTGAAGCTGTAATCTGTGTACAGATTTTTACCTGGGGCTCCTTTTGCTGTGCCAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis