Browse Element(s) Details


Os.52581.1.S1_at

Description gb:AK068148.1
DB_XREF= gi:32978166
TID=Os.52581.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134G11, full insert sequence.
FL= gb:AK068148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g536404/11Peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os04g53630NANA4+31747400..31749238pentatricopeptide, putative, expressed
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52581.1.S1_at--506--1051Chr04:31753343..31753367 (25 bp)
AGGTGGGCACACTCTTGGAACCTCC
LOC_Os04g53640
Os.52581.1.S1_at--1097--8071Chr04:31753510..31753534 (25 bp)
GGAGCTTCAGGACGTTCGACACCAG
LOC_Os04g53640
Os.52581.1.S1_at--620--1571Chr04:31753533..31753557 (25 bp)
AGCTACTACAGGCACATCGCCAGGG
LOC_Os04g53640
Os.52581.1.S1_at--1020--6431Chr04:31753727..31753751 (25 bp)
GATCAGGAAGCACTGTGCCTTTGTG
LOC_Os04g53640
Os.52581.1.S1_at--57--7291Chr04:31753741..31753765 (25 bp)
GTGCCTTTGTGAATTAGGCTGCAAA
NONE
Os.52581.1.S1_at--428--2611Chr04:31753775..31753799 (25 bp)
AACCGCTGAACTGCATTTGTCTGAA
NONE
Os.52581.1.S1_at--840--4951Chr04:31753787..31753811 (25 bp)
GCATTTGTCTGAAGTGTTAGCTGTT
NONE
Os.52581.1.S1_at--1140--6771Chr04:31753802..31753826 (25 bp)
GTTAGCTGTTTGATATTCCTTGGTA
NONE
Os.52581.1.S1_at--1070--10111Chr04:31753847..31753871 (25 bp)
TATGTTTTGTTATGCCTTTGTTTGT
NONE
Os.52581.1.S1_at--919--7031Chr04:31753891..31753915 (25 bp)
GTAAACTATTTGCTTCATTCAAGGA
NONE
Os.52581.1.S1_at--1120--2431Chr04:31753919..31753943 (25 bp)
AAAATGTTGCGTAATGCCTTCGGTG
NONE
Target Sequence 
AGGTGGGCACACTCTTGGAACCTCCCATTGTTCATCCTTCGCCAGCCGGCTGTACAACTTCAGCGGCATGATGATGGCCG
ACCCGACGCTGGACAAGTACTACGTGCCGAGGCTGAAGAGCAAGTGCCAGCCCGGCGACAAGACGACGCTGGTGGAGATG
GACCCGGGGAGCTTCAGGACGTTCGACACCAGCTACTACAGGCACATCGCCAGGGGCAGGGCGCTCTTCACCTCCGACGA
GACGCTCATGCTCGACCCTTTCACCAGGGGCTACATCCTCCGCCAGGCCGGCGTCGCCGGCTACCCGGCGGAGTTCTTCG
CCGACTTCGCGGCGTCCATGGTGAAGATGGGGAACATGCAGGTGCTCACCGGCGCCCAGGGGGAGATCAGGAAGCACTGT
GCCTTTGTGAATTAGGCTGCAAATATATATACAACCGCTGAACTGCATTTGTCTGAAGTGTTAGCTGTTTGATATTCCTT
GGTATATGTAGAATTATTGTGAAATATGTTTTGTTATGCCTTTGTTTGTATTATGATGTACAATCAAAGTAAACTATTTG
CTTCATTCAAGGAAATAAAATGTTGCGTAATGCCTTCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis