Browse Element(s) Details


Os.14513.1.S1_at

Description gb:AK066646.1
DB_XREF= gi:32976664
TID=Os.14513.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071L19, full insert sequence.
FL= gb:AK066646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5366011/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53600OsAffx.4169.1.S1_at11/114+31737145..31738486hypothetical protein
LOC_Os04g53606OsAffx.26671.1.S1_x_at11/114+31738650..31739569expressed protein
LOC_Os04g53606Os.55628.1.S1_at11/114+31738650..31739569expressed protein
LOC_Os04g53612Os.52009.1.S1_at11/114+31740539..31742815expressed protein
LOC_Os04g53612OsAffx.25647.1.S1_x_at2/114+31740539..31742815expressed protein
LOC_Os04g53620Os.4415.1.S1_at11/114+31743479..31746140polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os04g53630NANA4+31747400..31749238pentatricopeptide, putative, expressed
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14513.1.S1_at--741--6311Chr04:31758996..31759116 (25 bp)
GATAAAACTGAATCTTGTTTCCTTG
LOC_Os04g53660
Os.14513.1.S1_at--166--10811Chr04:31758982..31759006 (25 bp)
TTGTTTCCTTGTTTTCCTGTATTGG
LOC_Os04g53660
Os.14513.1.S1_at--470--6871Chr04:31758955..31758979 (25 bp)
GTTTGGAACCATACTATATGATCAG
LOC_Os04g53660
Os.14513.1.S1_at--736--6311Chr04:31758931..31758955 (25 bp)
GATGAATGTCAGAAACCAAAGCCTA
LOC_Os04g53660
Os.14513.1.S1_at--1004--5531Chr04:31758920..31758944 (25 bp)
GAAACCAAAGCCTACAATGTTAGTA
LOC_Os04g53660
Os.14513.1.S1_at--662--151Chr04:31758876..31758900 (25 bp)
ATTAGAATCTTACATGTTCATGTGC
LOC_Os04g53660
Os.14513.1.S1_at--50--6751Chr04:31758861..31758885 (25 bp)
GTTCATGTGCAATCTTAGCAGCTAC
LOC_Os04g53660
Os.14513.1.S1_at--1100--3651Chr04:31758848..31758872 (25 bp)
CTTAGCAGCTACATCACTTTAGGAT
LOC_Os04g53660
Os.14513.1.S1_at--332--7991Chr04:31758827..31758851 (25 bp)
GGATGTTTTAGATCATGCTTGTAAT
LOC_Os04g53660
Os.14513.1.S1_at--525--10711Chr04:31758802..31758826 (25 bp)
TTGTAATTGAAACATTTTGATCCCA
LOC_Os04g53660
Os.14513.1.S1_at--1--10871Chr04:31758777..31758801 (25 bp)
TTGGCAATCATGAATATCTTGTTCT
LOC_Os04g53660
Target Sequence 
GATAAAACTGAATCTTGTTTCCTTGTTTTCCTGTATTGGAAGTTTGGAACCATACTATATGATCAGATGAATGTCAGAAA
CCAAAGCCTACAATGTTAGTAACTTTATATGGAAGTACATATTAGAATCTTACATGTTCATGTGCAATCTTAGCAGCTAC
ATCACTTTAGGATGTTTTAGATCATGCTTGTAATTTGTAATTGAAACATTTTGATCCCATTGGCAATCATGAATATCTTG
TTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis