Browse Element(s) Details


OsAffx.4171.1.S1_s_at

Description tigr:9632.m05213
TID=OsAffx.4171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5368011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53640Os.52581.1.S1_at4/114+31751840..31753757Peroxidase 1 precursor, putative, expressed
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4171.1.S1_s_at--399--3971Chr04:31779169..31779193 (25 bp)
CGGTATTCCTTCGATTGCTAGTATA
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--1015--10191Chr04:31779172..31779196 (25 bp)
TATTCCTTCGATTGCTAGTATAGCC
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--194--9091Chr04:31779184..31779208 (25 bp)
TGCTAGTATAGCCAGCGTTGCCAAA
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--540--6891Chr04:31779189..31779213 (25 bp)
GTATAGCCAGCGTTGCCAAAGAGCG
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--923--1611Chr04:31779197..31779221 (25 bp)
AGCGTTGCCAAAGAGCGCGTTCTGT
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--1044--4391Chr04:31779203..31779227 (25 bp)
GCCAAAGAGCGCGTTCTGTGTGTAT
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--1082--5871Chr04:31779209..31779233 (25 bp)
GAGCGCGTTCTGTGTGTATATATCA
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--1152--7911Chr04:31779277..31779301 (25 bp)
GGATTAATTACCTGCCAAAGTGCCA
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--1027--4391Chr04:31779290..31779314 (25 bp)
GCCAAAGTGCCAATTAGCAAATGTT
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--740--5131Chr04:31779306..31779330 (25 bp)
GCAAATGTTTGCCATACACGAACAT
LOC_Os04g53680
OsAffx.4171.1.S1_s_at--849--9171Chr04:31779315..31779339 (25 bp)
TGCCATACACGAACATTACTCGTTG
LOC_Os04g53680
Target Sequence 
CGGTATTCCTTCGATTGCTAGTATAGCCAGCGTTGCCAAAGAGCGCGTTCTGTGTGTATATATCAGGTTATCAACGAGAG
TTTTTGAGGCTGTAAAAAAATTAAAGACGGATTAATTACCTGCCAAAGTGCCAATTAGCAAATGTTTGCCATACACGAAC
ATTACTCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4171.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis