Browse Element(s) Details


OsAffx.4172.1.S1_at

Description tigr:9632.m05216
TID=OsAffx.4172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=blue copper protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5371011/11Plastocyanin-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4172.1.S1_at--411--4491Chr04:31789522..31789546 (25 bp)
GCCGGCAGCAAGACGTGGGCCATCA
LOC_Os04g53710
OsAffx.4172.1.S1_at--611--1911Chr04:31789534..31789558 (25 bp)
ACGTGGGCCATCAAGTGGGCCTCCG
LOC_Os04g53710
OsAffx.4172.1.S1_at--174--8171Chr04:31789562..31789586 (25 bp)
GGAACTACGGCGACTGGTCGTCCAA
LOC_Os04g53710
OsAffx.4172.1.S1_at--159--7811Chr04:31789577..31789601 (25 bp)
GGTCGTCCAAGAACACGGTCGCCGT
LOC_Os04g53710
OsAffx.4172.1.S1_at--1119--5631Chr04:31789606..31789720 (25 bp)
GACAGCGTCGTGTTCACGTACGGGA
LOC_Os04g53710
OsAffx.4172.1.S1_at--72--9431Chr04:31789705..31789727 (23 bp)
TCGTGTTCACGTACGGGACGCCGCA
LOC_Os04g53710
OsAffx.4172.1.S1_at--861--7191Chr04:31789813..31789837 (25 bp)
GTCGTCTTCGACAAGCCCGGGACGA
LOC_Os04g53710
OsAffx.4172.1.S1_at--1058--5591Chr04:31789822..31789846 (25 bp)
GACAAGCCCGGGACGAGGTACTTCG
LOC_Os04g53710
OsAffx.4172.1.S1_at--101--6711Chr04:31789850..31789874 (25 bp)
GTTCGTCCGGGTCGCACTGCAGCAT
LOC_Os04g53710
OsAffx.4172.1.S1_at--1059--4111Chr04:31789862..31789886 (25 bp)
CGCACTGCAGCATGGGCCAGAAGGT
LOC_Os04g53710
OsAffx.4172.1.S1_at--57--1471Chr04:31789880..31789904 (25 bp)
AGAAGGTGGCCATCACGGTCTCCAA
LOC_Os04g53710
Target Sequence 
GCCGGCAGCAAGACGTGGGCCATCAAGTGGGCCTCCGGCGGGAACTACGGCGACTGGTCGTCCAAGAACACGGTCGCCGT
CGGCGACAGCGTCGTGTTCACGTACGGGACGCCGCACACCGTCGACGAGCTGTCGGCGGCGGACTACACGGCGTGCAGCT
TCGCCGCCCCGCTCTCGTCGGACGCCGGCGGCAGCACCACCGTCGTCTTCGACAAGCCCGGGACGAGGTACTTCGCCTGT
TCGTCCGGGTCGCACTGCAGCATGGGCCAGAAGGTGGCCATCACGGTCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis