Browse Element(s) Details


OsAffx.4173.1.S1_s_at

Description tigr:9632.m05218
TID=OsAffx.4173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=thioredoxin h
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5373011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4173.1.S1_s_at--615--1691Chr04:31799262..31799286 (25 bp)
ACCACCGCCAAAAACGCGAGGCGAG
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--516--9511Chr04:31799175..31799199 (25 bp)
TCTCGTGCTCTCTGCTGCGAGTGCG
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--931--4631Chr04:31799144..31799168 (25 bp)
GCGTTGCATCGCATGCTCTTTGTGA
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--1088--4971Chr04:31799139..31799163 (25 bp)
GCATCGCATGCTCTTTGTGAATTGT
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--566--3531Chr04:31799133..31799157 (25 bp)
CATGCTCTTTGTGAATTGTGGGTGA
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--350--2731Chr04:31799063..31799087 (25 bp)
AAGACGACGAGCTTAGCTTTGCAAT
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--916--5911Chr04:31799055..31799079 (25 bp)
GAGCTTAGCTTTGCAATGTGCTGCT
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--239--4891Chr04:31799048..31799072 (25 bp)
GCTTTGCAATGTGCTGCTACGTGGG
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--656--8391Chr04:31798990..31799014 (25 bp)
GGCGCTCATCGTAGTGGGCCTCGTC
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--687--4551Chr04:31798934..31798958 (25 bp)
GCGAGCGGAAGGTCCAGCCGGACTG
LOC_Os04g53730
OsAffx.4173.1.S1_s_at--691--4611Chr04:31798737..31798761 (25 bp)
GCGAGCATGCCGTACCTTGGGCCGC
LOC_Os04g53730
Target Sequence 
ACCACCGCCAAAAACGCGAGGCGAGTTGGAGTTGGAGCTGGATCCCTCTCGCCATTGCTCTCTCTCTCCAGCCTCATTCT
CTTCCCCTCTCGTGCTCTCTGCTGCGAGTGCGGCTGCGGCGTTGCATCGCATGCTCTTTGTGAATTGTGGGTGAGAGAGC
GGTGGCCGGACGAGCTCGCCGGAGAGGAGGAAGAAGAAGAAGACGACGAGCTTAGCTTTGCAATGTGCTGCTACGTGGGG
AAGGCGACCAAGATCTTCCTGTGCCTCGCGGCGGCGCTCATCGTAGTGGGCCTCGTCCTGGGCTTCGGGCTGGCCCACCG
GACGTGGGGCGAGCGGAAGGTCCAGCCGGACTGCCGGTGGCCCGACTGCCAGCTCCAGCCGGCCTACGGCGGCGGCGGCG
GCGGCGGCGACCCTCTCCCGGCCACCTCCGGCGCCGGCGACACGCCGCCCGGCGTCCCGCTGACGGAGCCGGCCGTGGCC
GCGTTCCCCGGCGTCGCCTCTGCTTCGTCGGCCGCGCCGCCGACGGCGAGCATGCCGTACCTTGGGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4173.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis