Browse Element(s) Details


Os.16307.1.S2_a_at

Description gb:CB681840
DB_XREF= gi:29685565
DB_XREF=OSJNEf08I19.r
CLONE=OSJNEf08I19
TID=Os.16307.1
CNT=8
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.16307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153K03, full insert sequence
FL= gb:AK120653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5369011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53650NANA4+31756658..31757326Harpin-induced protein 1 containing protein, expressed
LOC_Os04g53660Os.14513.1.S1_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.2.S1_x_at11/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53660Os.14513.3.S1_at10/114+31758191..31762095hAT family dimerisation domain containing protein, expressed
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16307.1.S2_a_at--203--6251Chr04:31782371..31782395 (25 bp)
GATGGAGCGCATTCTTGACGATGAA
LOC_Os04g53690
Os.16307.1.S2_a_at--611--471Chr04:31782744..31782768 (25 bp)
ATCTGCCCTGAGTGAAGCTGGACTT
LOC_Os04g53690
Os.16307.1.S2_a_at--396--8151Chr04:31782792..31782934 (25 bp)
GGACAAGGTTCTCTTCTGTAGTACA
LOC_Os04g53690
Os.16307.1.S2_a_at--730--1171Chr04:31782929..31782953 (25 bp)
AGTACAGAAAATGGCCGCACCTCTT
LOC_Os04g53690
Os.16307.1.S2_a_at--735--10391Chr04:31782952..31782976 (25 bp)
TTTTGTGCGGCAACTGGAACCTGAT
LOC_Os04g53690
Os.16307.1.S2_a_at--1112--5431Chr04:31782968..31782992 (25 bp)
GAACCTGATTGGCACATTGATACTA
LOC_Os04g53690
Os.16307.1.S2_a_at--952--371Chr04:31783104..31783128 (25 bp)
ATCAACTACATATTTCTCCACAACG
LOC_Os04g53690
Os.16307.1.S2_a_at--42--4991Chr04:31783142..31783166 (25 bp)
GCATCCAATGTTTTCAGCTCTACAA
LOC_Os04g53690
Os.16307.1.S2_a_at--1031--8871Chr04:31783482..31783506 (25 bp)
TGATGGAACTCGTTTTTCTTGTACC
LOC_Os04g53690
Os.16307.1.S2_a_at--565--8771Chr04:31783526..31783550 (25 bp)
TGTTAAACTGGTTCTGCAACTCCCC
LOC_Os04g53690
Os.16307.1.S2_a_at--866--3031Chr04:31783584..31783608 (25 bp)
AATCCATGTATCAATTGTGTTCCTG
LOC_Os04g53690
Target Sequence 
GATGGAGCGCATTCTTGACGATGAAAGCGGAGAAAAGGTGTTATCTGCCCTGAGTGAAGCTGGACTTTTTACGAACAGTG
GATTGATAAAGGACAAGGTTCTCTTCTGTAGTACAGAAAATGGCCGCACCTCTTTTGTGCGGCAACTGGAACCTGATTGG
CACATTGATACTAGTCCAGAAATTGTTCATCAGCTAGCTAGGTTTATCAAATATCAACTACATATTTCTCCACAACGAGC
AGAAAGAGTAGCATCCAATGTTTTCAGCTCTACAAGCTTGGAACAATTCTTTGGAGGCCTTGATCAGAGATGATAATATG
AGGTGAGCTCCAGCAAACNATGGCATAGCGAGAACTGAGACGAACATCATTGTTCATTTTTTTTCCNTTGAATGATGGAA
CTCGTTTTTCTTGTACCNATGTGTAAAAGTCGTGTGTCATGTTAAACTGGTTCTGCAACTCCCCATAAGCTATGGAAAGA
GATAGCATCTGTAGCATAATCCATGTATCAATTGTGTTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16307.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis